Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01781 ATGGGTAGATCCCCTTGTTGCGAGAAAGAACACACCAACAAAGGTGCTTGGACCAAAGAAGAAGACGAACGCCTCATCAACTACATCAAGCTCCACGGTGAAGGCTGTTGGAGATCTCTCCCCAAAGCTGCTGGCTTGTTGAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTCAAGAGAGGCAACTTCACTGAAGAGGAAGATGAACTCATCATAAACCTCCACAGCTTACTTGGAAACAAATGGTCTCTAATAGCTGCAAGGTTACCTGGAAGAACAGATAATGAAATAAAAAACTATTGGAACACTCACATCAAGCGAAAACTCTATAGCCGCGGAATCGACCCACAAACCCATCGACCACTCAACTCCTCCGCCACTCCGGCCAACACCGTCACAGCCACCGCACTTCCATCTGCTAACAGCAACAAGAAGATAAACAAGAACAACAATAGCATTAGCAGCACCAACAATATTAACAATAACAACAACAACGGTTTTCAGTTGGTGACTAATAGTGCTTATGCCAACAACACAAAGATTGGAACCGACTTGGTTAACGAAGATTCCAACAGCAGCAGCGGCGTTACCACAGAAGAATCGTCGTTCCCTCACCATCAACTCAACTTGGACCTTTCCATTGGGCTTCCCTCTCAACCCCAACAAGTATCTTCTTCGGTGAACCCAGAAAAGTTGTTGAAACCGTCACAACCGCAAGAGCATGATCAAAAGCCACAGGTTTTGTATCAGTGGTATGGAAACATTACTGGCCAACAACAAGGTGTGTGCCTGTGTTACAATCTAGGGCTTCAAAGCAACCAAGCTTGTTATTGCAAAACCATGGGTACTGCTACTTCGGTTACTACAACTGCCACCGGTAGTAATCTATATAGATTCTACAGACCCATGAATATTTAG 939 0.4494 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSSATPANTVTATALPSANSNKKINKNNNSISSTNNINNNNNNGFQLVTNSAYANNTKIGTDLVNEDSNSSSGVTTEESSFPHHQLNLDLSIGLPSQPQQVSSSVNPEKLLKPSQPQEHDQKPQVLYQWYGNITGQQQGVCLCYNLGLQSNQACYCKTMGTATSVTTTATGSNLYRFYRPMNI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01781 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo10g01781 312 CDD SANT 69 112 IPR001005 -
Pumo10g01781 312 Gene3D - 69 141 - -
Pumo10g01781 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo10g01781 312 MobiDBLite consensus disorder prediction 223 250 - -
Pumo10g01781 312 CDD SANT 16 61 IPR001005 -
Pumo10g01781 312 SMART sant 13 63 IPR001005 -
Pumo10g01781 312 SMART sant 66 114 IPR001005 -
Pumo10g01781 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo10g01781 312 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo10g01781 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo10g01781 312 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pumo10g01781 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo10g01781 312 MobiDBLite consensus disorder prediction 145 172 - -
Pumo10g01781 312 MobiDBLite consensus disorder prediction 192 211 - -
Pumo10g01781 312 FunFam MYB-related transcription factor 13 66 - -
Pumo10g01781 312 FunFam Myb transcription factor 68 137 - -
Pumo10g01781 312 Gene3D - 14 66 - -
Pumo10g01781 312 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01781 Pumo-Chr10 23450883 23452571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01781 1 230 MYB Transcription Factor Family AT4G09460 57.826 9.67e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g01781 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01781 K09422 - gmx:100808083 489.96