Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01778 ATGGATAAGTACGAGGCCGTTAAGGATTTGGGAGCTGGCAATTTTGGGGTGGCTAGGCTTATGAGGAACAAGGTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCCCAAGATTGATGAGAACGTGGCAAGGGAGATTATGAACCACAGGTCCCTTCGCCATCCCAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACACATTTGGCAATTGTGATGGAGTATGCAGCAGGAGGAGAGCTCTTTGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATATCCGGTGTCCATTTCTGTCATACCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTCTAGATGGAAGTCCTGCACCCCGGTTGAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTGCATTCGCGACCCAAATCAACTGTTGGAACACCGGCTTATATAGCACCAGAAGTTCTTTCTAGGCGAGAGTATGATGGAAAGATGGCTGATGTATGGTCATGTGCGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGGATGACCCCAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTCTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGTAGACACCTCCTCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATCTATTACCAGAGAGACAGCCCAAACTTTCACCTTCAAAGTGTGGATGAGATAATGAAAATTGTGGGAGAGGCCAGAAATCCACCTCCAGTATCTAGGCCAGTCAAAGGTTTTGGCTGGGGAGGTGAGGAAGATTTGGATGAAGAAGTGGAGGAAGAGGAGGATGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGGGAATTCCAAATTAGTTAA 1053 0.4416 MDKYEAVKDLGAGNFGVARLMRNKVTKELVAMKYIERGPKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCAVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMALQYKIPDYVHISQDCRHLLSRIFVANPLRRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDSPNFHLQSVDEIMKIVGEARNPPPVSRPVKGFGWGGEEDLDEEVEEEEDEEDEYDKRVKEVHASGEFQIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01778 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Pumo10g01778 350 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01778 350 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Pumo10g01778 350 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Pumo10g01778 350 SUPERFAMILY Protein kinase-like (PK-like) 2 296 IPR011009 -
Pumo10g01778 350 Coils Coil 317 344 - -
Pumo10g01778 350 MobiDBLite consensus disorder prediction 304 350 - -
Pumo10g01778 350 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Pumo10g01778 350 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Pumo10g01778 350 PANTHER SERINE/THREONINE KINASE 3 298 - -
Pumo10g01778 350 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Pumo10g01778 350 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01778 350 CDD STKc_SnRK2 3 259 - -
Pumo10g01778 350 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01778 350 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01778 Pumo-Chr10 23407508 23410962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01778 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.222 9.08e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Pumo10g01778 Pkinase 7.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01778 K14498 - gmx:547811 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00608 6 7691485 7695403 Pumo10g01778 10 23407508 23410962 PCT