Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01773 ATGCCGCTTTTGAAGAGAAAGCCTTTTGCCTTGCCTGAGCCACCTAATGATTTGGAGCCACATGAGAATATTTATCAACTTCGATTTACGAAAGAAATATTTCGAGATTATAATGATTATTTGAACCGTCTAAATCAATACCGCCAGAGGGTTTGGACATGCAAAATTACGGGAAAATCTGGCTTGACTTATGAAGAGGCTCTGGTGTCAGAGAAGCATGCTACTGAGAAAGTTCAACAGATTCCGGAAGAATTAGTGGCACCTGCTCTAAGGATTATTCAGTACAGCATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAAAGTTGCAGGAGCAGTTGTTTGTGGGTGCTCAATTGTATGGAAAAAAGAATGACAGAGTACATCCATGTAAAATATTGAAAGTGATGCAGGAAGATGCTGAAAATGTCCGCTATGTGGTAGCTTGGCTTGATGAAAACAATAATATTATTGAAAGAGCAGAAGTCAGCTCTCAAGATTTTGTACAGAAGAAGCCACCTTTTAGTAGAAATGTTTTGAAGTCTTTTATCCGTGAATCTACATATCGAAATGCTCCTTGGGTTTTACATGATAAACTGGCAAAAAAACATGGAATCTCAACTGACATTCCAAAGGAGTTAAGAGGAAAGGTTTTCTTCAACAATGGGCTTGTGGTCTGCACCAAAAAAAGGAAAAATGAGGAAGAGTCAATCAAATATCCTATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCTGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATTTATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTTTATGTCTTTTGGTAAACTGTTGCGGTTGTGGCCTTACTCTCTCAAAGATTTTGAAAATGCAATTAGCCACAAGGAAAGCAATGTAGTTCTTCTAGTGGAATCTCATACAGTACTCCTTCGAGTGCTCATCAAAGGCGATGATGAATACTCTGCAGCTGTTCAGGAAAAAATACATAAGAAGATTACAATGATTAGTTGGAAAGACTATTTATGTGATTTTCTTAAAATGATCAAAATTCCCAAGCTGCGGCAGTATGAAGCAACCATTAAACGGGGAGATTATGGTTATGTAGATGTCAATGCTAAATTAGAAATCTTTCATGAATTAGTCAATAGAGCCCTTGGAACAGCTTTTGTCAGGGGAAAATTGGATGAGTTTATTGAACAGAGGCAGGTACTGGGGGCTGCTAAAAGGGAAGAAGCAATTGAAGCTGCTGGGAAGAGAAGAAAAGAAAAGGAGCAGTTGAAAGCTGATTCTGATAGCTACTGCGGCGAGAATGGGCATCATCTTGGCCATGATGCAAGTGGGTCAACAAATAATAATCACAGAATACAGAATGGTGACATTGGGAAGAATAGAAACGGAGAGATAGAATCATCTAGGCAAAAAGATGCATTGGATAGTGGGATCAAGCATTCATGCCTTGATTCAAAAGTGAATGCTAAAAAGTTAGATTTGGAGCTGAATGGAACAGCAGAAATTGGAGAAGTATCCAGAAAGGAATCACAGAAACAACCAAAGGGTGACAAGGATCAACCACAGAGAAAAAGAATACTTTGA 1632 0.3866 MPLLKRKPFALPEPPNDLEPHENIYQLRFTKEIFRDYNDYLNRLNQYRQRVWTCKITGKSGLTYEEALVSEKHATEKVQQIPEELVAPALRIIQYSMLPLKDLADSIAEKLQEQLFVGAQLYGKKNDRVHPCKILKVMQEDAENVRYVVAWLDENNNIIERAEVSSQDFVQKKPPFSRNVLKSFIRESTYRNAPWVLHDKLAKKHGISTDIPKELRGKVFFNNGLVVCTKKRKNEEESIKYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIYCVGDLLMVWDFFMSFGKLLRLWPYSLKDFENAISHKESNVVLLVESHTVLLRVLIKGDDEYSAAVQEKIHKKITMISWKDYLCDFLKMIKIPKLRQYEATIKRGDYGYVDVNAKLEIFHELVNRALGTAFVRGKLDEFIEQRQVLGAAKREEAIEAAGKRRKEKEQLKADSDSYCGENGHHLGHDASGSTNNNHRIQNGDIGKNRNGEIESSRQKDALDSGIKHSCLDSKVNAKKLDLELNGTAEIGEVSRKESQKQPKGDKDQPQRKRIL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01773 543 SMART testlast3 271 332 IPR018501 -
Pumo10g01773 543 MobiDBLite consensus disorder prediction 505 543 - -
Pumo10g01773 543 MobiDBLite consensus disorder prediction 521 543 - -
Pumo10g01773 543 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Pumo10g01773 543 MobiDBLite consensus disorder prediction 428 451 - -
Pumo10g01773 543 MobiDBLite consensus disorder prediction 456 472 - -
Pumo10g01773 543 MobiDBLite consensus disorder prediction 428 491 - -
Pumo10g01773 543 Pfam DDT domain 273 328 IPR018501 -
Pumo10g01773 543 ProSiteProfiles DDT domain profile. 271 332 IPR018501 -
Pumo10g01773 543 ProSiteProfiles WAC domain profile. 22 128 IPR013136 -
Pumo10g01773 543 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01773 Pumo-Chr10 23373037 23376823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01773 273 354 Homeobox Transcription Factor Family AT1G28420 34.615 2.03e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pumo10g01773 WAC_Acf1_DNA_bd 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01773 - - gmx:100784607 948.347