Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01749 ATGGGAGACGGCAGTGGCAGCAACCGGTCGAAGCCGGAGTGGCTGCAACAGTATGATCTGATAGGGAAGATTGGGGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGCATCAAGTCTTCCACCAATCGCGGAAAATCCATCGCCATCAAAAAATTCAAGCAATCCAAGGATGGCGACGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTGAGGGAGATAACGCACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATACGGACATGTCTCTTTATCTAGCTTTTGATTATGCAGAACACGACCTCTATGAAATAATAAGACATCATAGGGACAAAGTCAACCAATCCATTAACCAGTATACTGTTAAATCGTTACTCTGGCAGTTGCTCAATGGACTAAACTATCTACACAGTAATTGGATAATACATCGGGACTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCACCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACTATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCCGAGTTGTTGACTTTAAAGCCACTATTCCAAGGTGCAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATACACAACATATACAAGGACACAAATATGACAACACTAGCCTCTATAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCACGAAAGCGCATAACAGCAGCCCAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGACATTTGTGAATTATCCTACGCGTCCAGTGGATACAACAACAGATTTTGAAGGGACAGCCAGCATGCAACCTTCACAGCTGGTTTCGTCTGGAGCTGCAGTTTCTGGCAGCATGCCTGGTGGTCATGTATCAAATAGATCTGTCCCTCGGCCAATGAATGTTGGTGGCATGCAGAGAATACCTCATCAAGCAATGCAGGGATATAATCTCACATCTCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGCATCCCAATGCAACGAGGTGTTCCACAGCAACAGTTAAGAAGAAAAGACCAAATGGGGATGCCAGGATACCCTCCACAGCAGAAGTCAAGACGTATGTAA 1389 0.4464 MGDGSGSNRSKPEWLQQYDLIGKIGEGTYGLVFLARIKSSTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDTQHIQGHKYDNTSLYSVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGETFVNYPTRPVDTTTDFEGTASMQPSQLVSSGAAVSGSMPGGHVSNRSVPRPMNVGGMQRIPHQAMQGYNLTSQAGMGGGMNPGGIPMQRGVPQQQLRRKDQMGMPGYPPQQKSRRM 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01749 462 Gene3D Phosphorylase Kinase; domain 1 6 100 - -
Pumo10g01749 462 MobiDBLite consensus disorder prediction 376 395 - -
Pumo10g01749 462 MobiDBLite consensus disorder prediction 420 462 - -
Pumo10g01749 462 FunFam Cyclin-dependent kinase e-1 6 101 - -
Pumo10g01749 462 SMART serkin_6 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01749 462 Pfam Protein kinase domain 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01749 462 Gene3D Transferase(Phosphotransferase) domain 1 101 341 - -
Pumo10g01749 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Pumo10g01749 462 ProSiteProfiles Protein kinase domain profile. 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01749 462 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Pumo10g01749 462 SUPERFAMILY Protein kinase-like (PK-like) 13 329 IPR011009 -
Pumo10g01749 462 PANTHER CELL DIVISION PROTEIN KINASE 16 334 - -
Pumo10g01749 462 FunFam Putative cyclin-dependent kinase E-1 102 341 - -
Pumo10g01749 462 CDD STKc_CDK8_like 17 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01749 Pumo-Chr10 22983458 22991713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01749 1 462 Core Cell Cycle Gene Families AT5G63610 74.686 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Pumo10g01749 Pkinase 5.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01749 K02208 - gmx:100813433 907.516