Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01711 ATGGAAGATGAAAGCCATAGCAATTTGCCAAATGGGCTCAACACAGGAAGCCCTGAAAGCCCTTGCTTAAAGACATGCAACAACAACAATAACCACAATGGCAACAACAACAACAAAGAACAAGACCGTTTTCTCCCTATAGCCAACGTGGGAAGGATCATGAAAAAGGCCATCCCTGGCAATGGAAAAATCTCAAAGGATGCAAAGGAAACAGTTCAAGAATGTGTGTCAGAGTTCATCAGCTTTGTCACAGGGGAAGCCTCTGACAAATGCCAAAGAGAAAAGAGAAAGACCATCAATGGGGATGATATCATTTGGGCCATCACTACCTTAGGATTTGAGGATTATGTTGACCCTTTAAAATCCTATCTCCAAAAATACAAAGAGATAGAAGGAGAGAAACTTAACATTCCTAAGCAACAACGTTCTGAACAAAGGCTACATCAACATCAACATCCCCACCATGACCAAAATAACAATCTACCATTAAGTAGTGTATATTCCTCACCAAACCTCATTTCTCAACCTCCTTATGTAGCCACGGATCAGCTATTTTCCCTACCATTTTCTCCAAATTCAATTCAGAAACAGTTACAGCAGCAAGACCAGATCGATTCGGTGGGGCAATGGTAA 633 0.4123 MEDESHSNLPNGLNTGSPESPCLKTCNNNNNHNGNNNNKEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYKEIEGEKLNIPKQQRSEQRLHQHQHPHHDQNNNLPLSSVYSSPNLISQPPYVATDQLFSLPFSPNSIQKQLQQQDQIDSVGQW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01711 210 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo10g01711 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
Pumo10g01711 210 MobiDBLite consensus disorder prediction 1 42 - -
Pumo10g01711 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo10g01711 210 MobiDBLite consensus disorder prediction 7 42 - -
Pumo10g01711 210 MobiDBLite consensus disorder prediction 134 155 - -
Pumo10g01711 210 MobiDBLite consensus disorder prediction 134 166 - -
Pumo10g01711 210 SUPERFAMILY Histone-fold 41 144 IPR009072 GO:0046982
Pumo10g01711 210 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Pumo10g01711 210 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Pumo10g01711 210 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Pumo10g01711 210 Gene3D Histone, subunit A 30 165 IPR009072 GO:0046982
Pumo10g01711 210 FunFam Nuclear transcription factor Y subunit B-3 33 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01711 Pumo-Chr10 22529282 22529914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01711 12 207 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.462 5.09e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo10g01711 CBFD_NFYB_HMF 6.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01711 K08065 - gmx:100778216 322.013