LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g01707	ATGAAGAAACAAGGGTGTGAGGTTGAGGCAATAGGCATCAACTACAAGATCCGTACAAAGACAACCGAGCAACCTTTTAAAATCTTCAGCAAACTTCCAAAATTGAATGGGGAAGAAGATGGTCATGAAGCAGAAGATGAAGCAAAAACTGAACAAAGATTATGCAGTGGAGTTAGGCATGTTCTCAAGGATGTGAATTGCATAGCAAAGCCAAGGGAAATTCTGGCAATTGTTGGGCCAAGTGGGGCTGGAAAGTCATCCCTTCTTGAGATCCTTTCTGGTAAAGCTAGTCCACAAAGTGGGTCTATCTTGGTGAATCAAGAACCTGTGGATAAAGCTCAGTTCAAAAAAATTTCAGGTTATGTTACACAAAAGGATACCTTGTTTCCGTTACTTACGGTTGAAGAAACCATTATGTTTAGTGTCAAGTTAAGGTTAAATCTTCCTCAAGAGCAATTATGCTCCAGGGTCAAGTCACTGATTCTTGAGCTTGGTCTTAGCCATGTTGCTAGGACTAGAATTGGAGATGACAGGGTCCGCGGCATATCTGGTGGCGAGAGGCGCCGAGTTTCCATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGATTTTGGATGAACCAACTTCAGGGCTTGACAGCACCTCAGCTTTGCAAACAATTGATATGCTTAAAGTCATGGCTGACTCTAGGGGACGAACTATAATCCTAAGTATCCACCAACCCGGATACAGAATAGTGAAGTTGTTCAACTCATTACTGTTATTGGCCAATGGCAATGTGTTACACCATGGCACTGTGGATTTGCTGGGTGTGAACCTAAGGCTAATGGGTTTAGAGCTTCCTCTTCATGTTAATGTAGTTGAGTTTGCCATTGATTCCATTGAGACCATTCATCAACAACAAAAATGTCAGCAGGAATGTCAGCAGGTTCAGCTAGAAGCGCCAAGGCGATTACCAGGGACAATGCAACAAAAGAAAGGTGGTGATCAAGGTGAGAGTATTAGTGGTAAGTTTACTTTGCAACAGCTCTTTCAACAATCCAAGGTAATTGACATAGAAATCGTTAGTGCGGGAATGGATATCACTTGTGATTTTGCTAATTCCGGATTAAGAGAAACTATGATTCTCACTCATAGATTCTCCAAAAACATCCTTCGCACAAAGGAACTCTTTACATGGAGGACAATTCAGATGCTGGTTTCTGGGATGGTTTTGGGCTCAGTCTTTTGTAATCTCAAGGATGGTCTAGTGGGAGCAGAAGAAAGAGTGGGTCTATTTGCTTTCATATTAACGTTTTTGTTATCAAGCACCACCGAAGCTCTACCAATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAGACCTCTAGTGGAAGCTACAGAGTTTCATCCTATGTTATTGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTGTTCACAATGCCTTTGTACTGGCTTATTGGTCTCAATAGGAATTTCACGGCATTTTTGTACTTTTTGATGCTAATTTGGCTGATTCTTTACACTGCAAATTCGGTTGTGGTATGTTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGGAATTCAATGATAGCTGGTATCATCGGTTCGTTTCTCTTGTTCTCTGGCTACTTCATATCAAAACACGAAATTCCAAGTTACTGGATTTTCATGCATTATATATCTCCATTTAAGTATCCCTTTGAAGGGTTCCTAATAAATGAGTTCTCCAACTCAAAAAAGTGCTTGGAGTACTTGTTTGGGGCATGTGTAGTGAGAGGAGAGGATGTACTTAATGAAGCAAAGCTTGGAGGGGAAACTAGTAAATGGAAGAATGTTGGGGTGATGGTGTGCTTCATCTTGGTTTACAGATTCATTTCTTATGTAATTCTTAGGTACAGATGCTCGCAAGGAGTCATCCTAAAAGTATGA	1950	0.4087	MKKQGCEVEAIGINYKIRTKTTEQPFKIFSKLPKLNGEEDGHEAEDEAKTEQRLCSGVRHVLKDVNCIAKPREILAIVGPSGAGKSSLLEILSGKASPQSGSILVNQEPVDKAQFKKISGYVTQKDTLFPLLTVEETIMFSVKLRLNLPQEQLCSRVKSLILELGLSHVARTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQTIDMLKVMADSRGRTIILSIHQPGYRIVKLFNSLLLLANGNVLHHGTVDLLGVNLRLMGLELPLHVNVVEFAIDSIETIHQQQKCQQECQQVQLEAPRRLPGTMQQKKGGDQGESISGKFTLQQLFQQSKVIDIEIVSAGMDITCDFANSGLRETMILTHRFSKNILRTKELFTWRTIQMLVSGMVLGSVFCNLKDGLVGAEERVGLFAFILTFLLSSTTEALPIFLQEREILMKETSSGSYRVSSYVIANGLVYLPFLLILAILFTMPLYWLIGLNRNFTAFLYFLMLIWLILYTANSVVVCFSALVPNFIVGNSMIAGIIGSFLLFSGYFISKHEIPSYWIFMHYISPFKYPFEGFLINEFSNSKKCLEYLFGACVVRGEDVLNEAKLGGETSKWKNVGVMVCFILVYRFISYVILRYRCSQGVILKV	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g01707	649	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	42	283	IPR003439	GO:0005524
	Pumo10g01707	649	ProSitePatterns	ABC transporters family signature.	182	196	IPR017871	GO:0005524\|GO:0016887
	Pumo10g01707	649	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	59	269	IPR027417	-
	Pumo10g01707	649	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	12	632	-	-
	Pumo10g01707	649	SMART	AAA_5	71	262	IPR003593	GO:0016887
	Pumo10g01707	649	Gene3D	-	50	318	IPR027417	-
	Pumo10g01707	649	FunFam	ABC transporter G family member 5	47	307	-	-
	Pumo10g01707	649	Pfam	ABC transporter	62	210	IPR003439	GO:0005524
	Pumo10g01707	649	Pfam	ABC-2 type transporter	374	582	IPR013525	GO:0016020\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g01707	Pumo-Chr10	22490104	22492154	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g01707	60	288	Calmodulin-binding Proteins	AT2G36910	24.790	2.54e-14	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g01707	K05681		-	gmx:121172640	1126.69