Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01706 ATGGAAGCTGATGGAAGCTTCAACCTTCCTCCTGGGTTTTTCTTCTCTCCAACTGATGAAGAACTTGTTCTTCACTTTCTCTATTGCAAGGCTTCTCTTATTCCATGCCATCCCAACATCATCCCCGATCTCGATCCCTCTCAGCTTCATCCTTGGGAACTAAATGGGAAGGCATTGTTAAGTGGAAATCAATACTACTTCTTTACCAACGTGAATGAAAACAGAACCACAGAAAATGGGTATTGGAAGGACACAGGTGTCACGGAACCTATATTGTCAACCTTTGATAAGAAAGTGGGAATGAGGAAGTACTTTGTATTCCACATTGGCGAAGATCCACAGGGTACCGAAACCAATTGGGTAATGCAAGAATATCATATATGTTCCTCTGGGTTTGACACTGCCTCACATCGAAGTGCTAGGAGAAGACGGAAAGATGATCAAAGTTGGAGCAAGTGGGTTTTGTGCAGAGTGTATGAGAAGAGCAGGTCTGAAGAAGGTGTAAACTGCTATAGCGATGAGGATGACAGTGGATCAGAGCTTTCTTGGCTAGACGAAGTTTATCTGTCGTTGGATGATGATATGGAAGAAATTGGCATGCCTATTTAG 609 0.4302 MEADGSFNLPPGFFFSPTDEELVLHFLYCKASLIPCHPNIIPDLDPSQLHPWELNGKALLSGNQYYFFTNVNENRTTENGYWKDTGVTEPILSTFDKKVGMRKYFVFHIGEDPQGTETNWVMQEYHICSSGFDTASHRSARRRRKDDQSWSKWVLCRVYEKSRSEEGVNCYSDEDDSGSELSWLDEVYLSLDDDMEEIGMPI 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01706 202 Pfam No apical meristem (NAM) protein 10 127 IPR003441 GO:0003677|GO:0006355
Pumo10g01706 202 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Pumo10g01706 202 PANTHER NAC TRANSCRIPTION FACTOR 56 9 168 - -
Pumo10g01706 202 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Pumo10g01706 202 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01706 Pumo-Chr10 22461256 22462488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01706 5 166 NAC Transcription Factor Family AT1G61110 39.766 1.29e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo10g01706 NAM 8.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01706 - - gmx:100170711 389.808