Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01680 ATGGATACCAACCAAAACACCACTACTACATTCACCTGCAGTGTTACTAACAGCACTTGGAATCACGAGAACATGGGAACAGATCATGAACATAACATCATCCTCCATGATCATCACCAAATTCCAACGGGTGTTGGAATTTGGCCCCACTACCACCACCCTCTTCACAATATTCAACCCTCATCCTCATCCAACGTGGCACCCTCTTCGAGCAATTTCCTCACCGATGTTCTAGGAGTCCACTTTGAAGAAGAAGAAGAAGATGAAGAAGAGGAGCTAGGAGCCATGAAGGAGATGATGTACAAAATGGCAGTGATGCAACCGGTGGACATAGACCCTGCCAGCGTGAGAAAACCAAAGAGGCGAAACGTGCGCATAAGCGATGACCCTCAGAGTGTGGCTGCACGCCACAGAAGAGAGAGGATCAGTGAGAAAATCCGCATCCTCCAAAGACTCGTCCCTGGTGGAACCAAATTGGACACTGCTTCTATGTTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAATCAACAACACCACACTCACAACCACCTCCAATTAATTGCATTGGTGCTGCTCCTAATTATGTTGATTCGCTTTTTGCACCAATTTTATTGCACGGTTCCACCTCCTCCTCCATGGACATGATGCCGGTTATTGGAATGGAATTCAACACCAGAGGCCATGGTCATGCCGGTGATTCCTCTTCGATCCACCTTAGACAATGA 750 0.4693 MDTNQNTTTTFTCSVTNSTWNHENMGTDHEHNIILHDHHQIPTGVGIWPHYHHPLHNIQPSSSSNVAPSSSNFLTDVLGVHFEEEEEDEEEELGAMKEMMYKMAVMQPVDIDPASVRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSTTPHSQPPPINCIGAAPNYVDSLFAPILLHGSTSSSMDMMPVIGMEFNTRGHGHAGDSSSIHLRQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01680 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Pumo10g01680 249 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 195 IPR045843 GO:0003700|GO:0006355
Pumo10g01680 249 Pfam Helix-loop-helix DNA-binding domain 136 175 IPR011598 GO:0046983
Pumo10g01680 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 186 IPR036638 GO:0046983
Pumo10g01680 249 SMART finulus 132 181 IPR011598 GO:0046983
Pumo10g01680 249 CDD bHLH_AtIND_like 127 184 - -
Pumo10g01680 249 FunFam BHLH transcription factor 129 191 - -
Pumo10g01680 249 Gene3D - 129 190 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01680 Pumo-Chr10 22023881 22024630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01680 95 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 73.636 7.26e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g01680 HLH 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01680 - - gmx:100779374 372.474