Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01679 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGACAATCCTGATTTTTCACCTGATGATAGTAAGCAATTGCGGTCTGGGTGGTCCTCTGCAGGTGATAAATTAAAGCCTGGTATGGGATTTTCATCCAAGGAACCTCTTTCTGGAGGCAGAGGTTCAAATAAGGACGATATTATGAATAAAGACTATAGAGTTTTGGATGCAACAATGGAATGGGATGATGATGGAAGTTACGGCAATAAAATGTCTCCTGGTTTGGAGGGATGGAAACATAAGAGACATAGTCAATCCCCCAAAAATGGTTGGAGCAGGTCAGTCAGGAGTAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAATGACAGAAATAGGATGCGGGCAGGAGGATCAACACAACCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCACTGCCATTTTCTTCATCATGATAATCAAAATCATGAGGATAGTTGGGAAGATAAGTACAGGGAAGATGGAGCTCCCAGATATTCTGCTTCCCACGAGGGTAGAGACTATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATTAATTTTGCAAAAGGCAGGTGTAAAATGGGAGCATCATGCAAGTTCGTGCATCATAACAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGTGGCGGGCATGGGCCAAATCGTAGTGGTGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGCAAGCAATCCTGGGGGAGATTATCATATGCTGGATAGACCAAAATTGAGTGATTCAGTTAGTCCTAATAGGAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGCGGAATGATACAGTTGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTGGGTGCCGCAGAGCAAGGATTCACTCCTTTGCCTACGAGGGATGGATGGGGTCATAGTTTGGATAAGAGCAGAGTGCATGGTGAACAGCCATTTTCAAGTGATAATAAGAAGGAAGCTGACAGTTGGATAGCAGGAAATACTGCTGCCAACATGCACGGTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATGATGCAAAAATGTCTCCTGATTGGGATTACAGGGTGAGATCTTCCAGCTGTATTGAAGAAAAGCATGAACAAAATAAGCATGGGATAACACAGGGTTTTATATATTTAGCCACCTCTGAACATGACAGAATACAAATTGCTCCAGGACAAGGTTTTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCAAGCTGCCAGGCAGTTGGACAAAGTCAAGTAGCAGTTCCCATTCTACCTTCAAAGGGTGGAATTGTTGATGGTATGATGAACCAGGAAGTCTCTACTGACAAAAAGTACACTGCTGAACCAAATATCATGGATGCAGGCTTATTAGTTAGTTCAAGAAATCCTCCTCCAACTGAGAACATGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCGCTGGCTCATATCCTTGGGACAGGGCCACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCACGATGCAAAGGACACATCCTCCCTAGCAAAAACTGAGGTGCCTGCTATGCCTGTTTCCAATACATTCATCAGGCCAGATCATGCTGTTGGACTATTGAAGCAGTATGATCCAATGTGTGACAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTACCCCCAGCCATTCCTCCAAGTAAAAAAGTTGCAGAAGTAGTGGAAATTCCGTCACAGTTGTCCAACACAGCAAGACAAAATTGTGGTGATTCTTCCAAGGCTGCTGGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCAGTTGCAGCCAGGTCAAAACACTGGGGTTAGTAAGGATAATAACAAGGAAGTGTTACATGAGGAAAGGCAAAAATCTAAAGATGATCCTAAAAGTACCAAAGAGAGTGATCCTTTGGAAATCATGGAGCAAACTGGTGGTCCTGATGAGGCCAAGAAAACAAAGGGTATGAAGGGGAGTCGTGCATTTAAATTTGCATTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAAGAGAAAATTGATCAGTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2514 0.428 MSGSGKKRSSKWDLRDNPDFSPDDSKQLRSGWSSAGDKLKPGMGFSSKEPLSGGRGSNKDDIMNKDYRVLDATMEWDDDGSYGNKMSPGLEGWKHKRHSQSPKNGWSRSVRSSRSRSPPHGFRWDSGVNDRNRMRAGGSTQPCRDFAAGKCRRGSHCHFLHHDNQNHEDSWEDKYREDGAPRYSASHEGRDYSLKSGRSNEACINFAKGRCKMGASCKFVHHNNSDGHGKVSVDELTREREIDRRHRDSSFEQGGGHGPNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWASNPGGDYHMLDRPKLSDSVSPNRRPRDDRWGSDGNKADADKVWDSPKRNDTVAVSDTAKLVEDKSENVGAAEQGFTPLPTRDGWGHSLDKSRVHGEQPFSSDNKKEADSWIAGNTAANMHGSQSIGTDIWLGDDAKMSPDWDYRVRSSSCIEEKHEQNKHGITQGFIYLATSEHDRIQIAPGQGFNQNAESLNPLHSSSCQAVGQSQVAVPILPSKGGIVDGMMNQEVSTDKKYTAEPNIMDAGLLVSSRNPPPTENMVGKEQLAQLTNLSASLAHILGTGPQLPQLYAALNSHDAKDTSSLAKTEVPAMPVSNTFIRPDHAVGLLKQYDPMCDSVEPKSAVASGVPPAIPPSKKVAEVVEIPSQLSNTARQNCGDSSKAAGSEELVKSDPLIQLQPGQNTGVSKDNNKEVLHEERQKSKDDPKSTKESDPLEIMEQTGGPDEAKKTKGMKGSRAFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGSMQGANIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKA 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01679 837 SUPERFAMILY CCCH zinc finger 263 286 IPR036855 GO:0046872
Pumo10g01679 837 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Pumo10g01679 837 MobiDBLite consensus disorder prediction 228 258 - -
Pumo10g01679 837 MobiDBLite consensus disorder prediction 710 734 - -
Pumo10g01679 837 MobiDBLite consensus disorder prediction 313 350 - -
Pumo10g01679 837 Gene3D - 257 312 - -
Pumo10g01679 837 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Pumo10g01679 837 SMART c3hfinal6 137 163 IPR000571 GO:0046872
Pumo10g01679 837 SMART c3hfinal6 198 223 IPR000571 GO:0046872
Pumo10g01679 837 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 836 - -
Pumo10g01679 837 MobiDBLite consensus disorder prediction 8 23 - -
Pumo10g01679 837 ProSiteProfiles Zinc finger C3H1-type profile. 197 224 IPR000571 GO:0046872
Pumo10g01679 837 MobiDBLite consensus disorder prediction 59 75 - -
Pumo10g01679 837 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872
Pumo10g01679 837 MobiDBLite consensus disorder prediction 388 406 - -
Pumo10g01679 837 Pfam RNA-binding, Nab2-type zinc finger 202 221 - -
Pumo10g01679 837 MobiDBLite consensus disorder prediction 292 407 - -
Pumo10g01679 837 MobiDBLite consensus disorder prediction 1 141 - -
Pumo10g01679 837 Pfam CCCH-type zinc finger 266 286 IPR041367 -
Pumo10g01679 837 MobiDBLite consensus disorder prediction 693 752 - -
Pumo10g01679 837 MobiDBLite consensus disorder prediction 228 252 - -
Pumo10g01679 837 Gene3D - 133 235 - -
Pumo10g01679 837 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Pumo10g01679 837 Coils Coil 831 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01679 Pumo-Chr10 22009259 22013500 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo10g01679 zf-CCCH 0.00011 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01679 - K22909 gmx:100783856 1579.3