Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01677 ATGAGAAAACCCACTAAACCCATAACCACATTCCTCCCATTCCCAATCTCAATTCTGAGATCCACCCTTGTTGTCATCTCCATGGCATCCCTCTCTTTCCTCTTGCTCCTCTTCTTCCTCCACTCCCACCCTCACTCCGCCATGGAGATCCACCAAGCCTGCAACGCCACGCGCTTCCCTCTCCAATGCCACTCCTCCCTCCTCCCCTACCTCCCCTCCACCCCCCTCCAAATCATCCAATCCGCCCTCACCGCCTCCTCCTCCAACCTCCTCCTCGTGCGATCCATGGTGCAGTCCATCGTGGACGCCTCCGCAGGCAACCACACCCGCTCCACCGCCGCCAAGAGCTGCCTCCAGGTCCTCCACTACTCCCACCACCGCACCTCCCTCGCCGCCCGCGCCCTCCCCCGCGGCGCCACCAAGGACGCCCGCGCCTGGATGAGCGCCTCCCTCGGCTACCAGTACGGCTGCTGGTCCGGCCTCAAGTACATCAACCACACCTCCCTCGTCGCCCAAACCATGTCGTTTCTCGACTCTCTCACAATTCTCTCCAGCAACGCCCTCAGCATGATGGTCTCCTACGACCTCTTTGGAAACGACACCGCTTCGTGGAGGCCGCCAATGACGGAGCGCGACGGCTTCTGGGAGCCCTCCGGGACCCAGGGGCTCGGGGCGGGACCCGCGGTGCCGTCAAAGTTGACGGCGGACGTTACGGTGTGTAAGGGGAAGGGTGAGGGTTGTTACGAGACGGTGCAGGAAGCGGTTAATGCGGCGCCGGATGACGCGGAAAAGAGGTTTGTGATATATATAAAGGAAGGGGTTTATGAGGAGAGGGTGAGGCTTCCGTTGAGGAAGAAGAATGTGGTGTTCTTTGGGGATGGCATGGGCAAAACCGTCATCACGGGATCTGCTAACGTGGGCCAGCCCGGAATGACAACCTACAACTCTGCCACCGTAGGGGTTGCTGGGGATGGATTTATAGCAAAGGATCTCACGATCCAGAACACGGCCGGTCCTAATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGTGATCTTTCTGTGATTGAGAACTGTGAATTCATAGGCAATCAAGATACTCTCTATGCTCATTCCCTGCGCCAGTTTTATAAGTCTTGCCGCATAATAGGCAATGTGGACTTCATCTTTGGGAACTCGGCGGCAATCTTCCAAGACTGCGAAATCCTAGTCCGGCCCAGGCAAGCCAGGCCAGAGAAGGGAGAGAGCAATGCAGTTACTGCGCAGGGCAGGACAGACCCTGCTCAGTCAACAGGGTTTGTTTTCCAGAACTGCATGGTTAATGGTACTGAGGAATACATGGCATTGTATTATAGCAAGCCTAAAGTTCACAGGAACTATCTGGGGAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATCCATTCATTCTTGGAAGCCCTTATCACGCCACAGGGCTGGATGCCATGGAGTGGGGATTTTGCACTGAAAACACTTTATTATGGGGAATTTGAGAACTCCGGACCTGGTTCTAATATGACTCAGAGGGTGCCCTGGAGTAACCAGGTCCCAGCCCAGCACGTGTTCTCGTATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGAATCATCAGTAA 1638 0.5537 MRKPTKPITTFLPFPISILRSTLVVISMASLSFLLLLFFLHSHPHSAMEIHQACNATRFPLQCHSSLLPYLPSTPLQIIQSALTASSSNLLLVRSMVQSIVDASAGNHTRSTAAKSCLQVLHYSHHRTSLAARALPRGATKDARAWMSASLGYQYGCWSGLKYINHTSLVAQTMSFLDSLTILSSNALSMMVSYDLFGNDTASWRPPMTERDGFWEPSGTQGLGAGPAVPSKLTADVTVCKGKGEGCYETVQEAVNAAPDDAEKRFVIYIKEGVYEERVRLPLRKKNVVFFGDGMGKTVITGSANVGQPGMTTYNSATVGVAGDGFIAKDLTIQNTAGPNAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSAAIFQDCEILVRPRQARPEKGESNAVTAQGRTDPAQSTGFVFQNCMVNGTEEYMALYYSKPKVHRNYLGRPWKEYSRTVFIHSFLEALITPQGWMPWSGDFALKTLYYGEFENSGPGSNMTQRVPWSNQVPAQHVFSYSVQSFIQGDDWNHQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01677 545 FunFam Probable pectinesterase/pectinesterase inhibitor 51 48 193 - -
Pumo10g01677 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 193 IPR035513 -
Pumo10g01677 545 PANTHER PECTINESTERASE 31 542 - -
Pumo10g01677 545 Pfam Pectinesterase 236 540 IPR000070 GO:0030599|GO:0042545
Pumo10g01677 545 SMART PMEI_2 45 190 IPR006501 GO:0004857
Pumo10g01677 545 CDD PMEI-like_3 53 191 - -
Pumo10g01677 545 Gene3D - 230 545 IPR012334 -
Pumo10g01677 545 Pfam Plant invertase/pectin methylesterase inhibitor 50 190 IPR006501 GO:0004857
Pumo10g01677 545 FunFam Pectinesterase 230 545 - -
Pumo10g01677 545 SUPERFAMILY Pectin lyase-like 235 543 IPR011050 -
Pumo10g01677 545 NCBIfam pectinesterase inhibitor domain 28 190 IPR006501 GO:0004857
Pumo10g01677 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 190 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01677 Pumo-Chr10 21998274 22001052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01677 47 542 Carbohydrate Esterase AT5G09760 67.126 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01677 - - gmx:100802102 976.467