Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01670 ATGGTGCGAGTCAGAGACGATTTATGCATAACCGTTCCCAGTTTCTTCAAGTGCCCTATCTCCCTCGACGTGATGAAATCCCCTGTGAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGGCGGCAACAACACCTGCCCCGCTACCATGCAGGTCCTCCAAACCAAAGACTTCGTTCCCAACCGCACTCTCCAAAGCCTCATCCAGATCTGGTCCGATTCGGTTCGCCACCGAACCGTTTCCGAACCGGTCCTTTCCCCTGACGAAATCCTCCGAACCGTTGCCGACTTGGAAACCGACTCTCTCCGGTTCGGTGCGCTCGCGAAACTGCTCCACTTCGCCAGAGATTCTCACCAGAACAAACTCTTCCTCGCGAAATTAGAAGGCTTCGTGAATAAACTCGTTCGCTTCCTCGACAATGTCGACGGCGGAGTAACCGCAGGAACTAGTGTTGAATTTCTCGAACAAGTCGTTGTCGTGTTAGGTTTGGTTCTCGATAGCATCGAAGATCGCGAGGGATTGAAAAAGTCGATGCTGAAAGGAAAGAAACAAAACTTAGATTCTCTGCTTTTAGTTCTGCAACGAGGAAGCTCCGATTCGAAAATCGCCTCCGCTAGGGTTCTGCAGTTCATCGCCGTGGACGCGGAGTCGAAGCTTTTGATCGCGGAGAAGGACGGCGTGGTGGCCGGATTGCTTTCATCGGCGGCGCCGGAGAAAGATCCGGCGCTGATCGAGCACGCGCTGGCGAGCCTGGTGGCGCTTTCTACGCCGAAGCGGAACAAATTGAAGCTGGTGAACCTCGGAGCGGTGAAGGCGATGTCGAGGCTGTTGACGGAGGCGAGTTTGGGGGCGGCGGGGGCGGAGAAGGTGCTGAAGCTGGTGGAAACGGCGTCGTCGACGAGGGAGGGGAGGAGGGAGATATGCGAGGATGCGGCGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGACCACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGTTATCTCTTTCGCGATCGTAAGGCGCAGGAAGCGGTGACGCAGAACAATGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGCGCGCCGCAGGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCTTGCCTTTCGTGCTACGACACCAAAACCACGCATATCATGCCGTTTTGA 1239 0.5626 MVRVRDDLCITVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDGGNNTCPATMQVLQTKDFVPNRTLQSLIQIWSDSVRHRTVSEPVLSPDEILRTVADLETDSLRFGALAKLLHFARDSHQNKLFLAKLEGFVNKLVRFLDNVDGGVTAGTSVEFLEQVVVVLGLVLDSIEDREGLKKSMLKGKKQNLDSLLLVLQRGSSDSKIASARVLQFIAVDAESKLLIAEKDGVVAGLLSSAAPEKDPALIEHALASLVALSTPKRNKLKLVNLGAVKAMSRLLTEASLGAAGAEKVLKLVETASSTREGRREICEDAACVAAVLSKVLKVSTTATEHAVTTLWSVCYLFRDRKAQEAVTQNNGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01670 412 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Pumo10g01670 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 92 IPR013083 -
Pumo10g01670 412 SUPERFAMILY RING/U-box 7 80 - -
Pumo10g01670 412 SUPERFAMILY ARM repeat 108 396 IPR016024 -
Pumo10g01670 412 Gene3D - 95 407 IPR011989 -
Pumo10g01670 412 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Pumo10g01670 412 CDD RING-Ubox_PUB 13 65 IPR045210 -
Pumo10g01670 412 PANTHER WDSAM1 PROTEIN 11 400 IPR045185 GO:0061630
Pumo10g01670 412 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Pumo10g01670 412 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01670 Pumo-Chr10 21906269 21907899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01670 5 412 U-box Gene Family AT5G64660 52.983 8.47e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01670 - - gmx:100801033 665.996