Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01663 ATGTATTCTGCTGCTACTTCCTTTACTTCACCACTCCTCCATGAGTTCCATTCAAGAAGGTTACTCATTCACTCCCCATATCTTAACCAATCGGCCAAGCCCCCAACAAGCAGCCACGATTCAACAGAAACATATCTTGGAGAAGGCAATTTCGATGCAAATGTTGTGATGGTACTCTCAGTCCTACTCTGTGCTCTTATCTGCTCACTGGGGCTAAACTCCATCATAAGGTGTGCTCTAAGATGTTCCAATTTTGTTGTGAGTGACTCAGTGGCAACCAATAATAACACTCCAGCAAGAGTGGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCTACAGTAAGTTACTCAACTGAGCTCAACCTGCCAAGTTTGGACTCAGAGTGTGTGATATGCTTGTCAGAGTTCACAAGTGGTGACAAGGTGCGCATTTTGCCAAAGTGCAACCACGGGTTCCATGTACGCTGCATTGACAAATGGCTAAGCTCACACTCATCATGCCCCAAATGCAGACAGTGCCTAATTGAGACCTGCCAAAAGATTGTTGGGTGCAGTCAACAACAAGCTAGCTCATCTCAATCTCAACAACCAGTGCCAGAAACCATTGTGACCATAGCCCCACTGGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTAGCTAA 675 0.4607 MYSAATSFTSPLLHEFHSRRLLIHSPYLNQSAKPPTSSHDSTETYLGEGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNTPARVANTGVKKKALKTFPTVSYSTELNLPSLDSECVICLSEFTSGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSQQQASSSQSQQPVPETIVTIAPLEPEGLVRNYRELS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01663 224 FunFam RING-H2 finger protein ATL73 92 179 - -
Pumo10g01663 224 SMART ring_2 132 173 IPR001841 -
Pumo10g01663 224 CDD RING-H2_EL5-like 131 174 - -
Pumo10g01663 224 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pumo10g01663 224 Pfam Ring finger domain 131 174 IPR001841 -
Pumo10g01663 224 PANTHER RING-H2 FINGER PROTEIN ATL78 13 216 IPR044602 GO:0016567|GO:0016740
Pumo10g01663 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 178 IPR013083 -
Pumo10g01663 224 SUPERFAMILY RING/U-box 110 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01663 Pumo-Chr10 21844068 21845140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01663 28 178 C3H Transcription Factor Family AT3G10910 46.795 7.24e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01663 K19040 - gmx:100787934 402.134