Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01660 ATGGAAAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAAATGACCCAAATAATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTACCTCACGCCATCCTCGTTTGGATCTTGCTGGCCGTGATCTGA 312 0.484 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILVWILLAVI 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01660 103 PANTHER ACTIN 1 95 IPR004000 -
Pumo10g01660 103 SUPERFAMILY Actin-like ATPase domain 65 95 IPR043129 -
Pumo10g01660 103 Gene3D - 57 95 - -
Pumo10g01660 103 ProSitePatterns Actins and actin-related proteins signature. 23 35 IPR020902 -
Pumo10g01660 103 PRINTS Actin signature 3 21 IPR004000 -
Pumo10g01660 103 PRINTS Actin signature 34 47 IPR004000 -
Pumo10g01660 103 PRINTS Actin signature 59 78 IPR004000 -
Pumo10g01660 103 Pfam Actin 1 94 IPR004000 -
Pumo10g01660 103 FunFam Actin, alpha skeletal muscle 1 69 - -
Pumo10g01660 103 CDD NBD_sugar-kinase_HSP70_actin 1 103 - -
Pumo10g01660 103 Gene3D - 1 56 - -
Pumo10g01660 103 SUPERFAMILY Actin-like ATPase domain 1 72 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01660 Pumo-Chr10 21807628 21808022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01660 1 95 Cytoskeleton Gene Families AT5G09810 100.000 7.24e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01660 K10355 - atri:130810600 196.438