Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01653 ATGGATACCAACCAAAACACCACTACTACATTCACCTGCAGTGTTACTAACAGCACTTGGAATCACGAGAACATGGGAACAGATCATGAACATAACACCATCCTCCATGATCATCACCAAATTCCAACGGGTGTTGGAATTTGGCCCCACTACCACCACCCTCTTCACAATATTCAACCCTCATCCTCATCCAACGTGGCACCCTCTTCGAGCAATTTCCTCACCGATGTTCTAGGAGTCCACTTTGAAGAAGAAGAAGATGAAGAAGAGGAGCTAGGAGCCATGAAGGAGATGATGTACAAAATGGCAGTGATGCAACCGGTGGACATAGACCCTGCCAGCGTGAGAAAACCAAAGAGGCGAAACGTGCGCATAAGCGATGACCCTCAGAGTGTGGCTGCACGCCACAGAAGAGAGAGGATCAGTGAGAAAATCCGCATCCTCCAAAGACTCGTCCCTGGTGGAACCAAATTGGACACTGCTTCTATGTTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAATCAACAACACCACACTCACAACCACCTCCAATTAATTGCATTGGTGCTGCTCCTAATTATGTTGATTCGCTTTTTGCACCAATTTTATTGCACGGTTCCACCTCCTCCTCCATGGACATGATGCCGGTTATTGGAATGGAATTCAACACCAGAGGCCATGGTCATGCCGGTGATTCCTCTTCGATCCACCTTAGACAATGA 747 0.4712 MDTNQNTTTTFTCSVTNSTWNHENMGTDHEHNTILHDHHQIPTGVGIWPHYHHPLHNIQPSSSSNVAPSSSNFLTDVLGVHFEEEEDEEEELGAMKEMMYKMAVMQPVDIDPASVRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSTTPHSQPPPINCIGAAPNYVDSLFAPILLHGSTSSSMDMMPVIGMEFNTRGHGHAGDSSSIHLRQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01653 248 Gene3D - 128 189 IPR036638 GO:0046983
Pumo10g01653 248 CDD bHLH_AtIND_like 126 183 - -
Pumo10g01653 248 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 194 IPR045843 GO:0003700|GO:0006355
Pumo10g01653 248 Pfam Helix-loop-helix DNA-binding domain 135 174 IPR011598 GO:0046983
Pumo10g01653 248 FunFam BHLH transcription factor 128 190 - -
Pumo10g01653 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 185 IPR036638 GO:0046983
Pumo10g01653 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Pumo10g01653 248 SMART finulus 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01653 Pumo-Chr10 21737352 21738098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01653 80 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 68.548 3.09e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g01653 HLH 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01653 - - gmx:100779374 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01653 10 21737352 21738098 Pumo10g01653 10 21737352 21738098 ECH
Pumo6g00683 6 8573927 8574745 Pumo10g01653 10 21737352 21738098 PCT