Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01648 ATGGCTCCAGCCACCACCAATTCTTCGCCCTCGGCTCAGAGGCACGTCGGCTTCAGCCGGCGCACGCAGGCGCCGCGCCAGCTGGACGAGGACTCGCCGCCGGTTAAGAAGTGCCGGCTGCTGTCGGAGATAATGGCGCGGGCGCCGTACGCGGTGGTGGAGAGAGAAAGTTACAGTGACCTGTTGTGCGAGCAATGCGGCTCCGGCGAGCTGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAAAGGCTTTCACATGAAATGCGTGAGGCCTATCGTCGTGAGGGTCCCGATTGGATCGTGGCTTTGCCCTAAGTGTCAGGGAGGGAAGAGAGTGCGGACTTTCTCTCAGAAGAAGATAATCGATTTCTTCGGGATTCGGAGGAGTTCTGATGATGCTAATGACAAGCGTTCTTCTCGGGATGCTAAGAAGCGTCGGAAACGTTCACGACCTCTGGTATTACATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCCCAGAGATTAAAACAGATGGGTTCACTTGCTTCTGCTTTAACAGCCTTAAATATGGAATTCAGTGATCACCTTACATACATGCCTGGAATGGCTCCTAGATCTGCGAATCAAGCCACACTAGAAAACGGTGGCATGCAGACTCTTTCCAAGGAAGACATGGAGACTGTAGAACAATGCATTGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCACGTGAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACGATTATTGCTGAATACACTGGCGATGTGGATTACCTTGACAACCGGGAACGTGACGATTGTGACAGTATGATGACCCTTCTTCTTGGAGCAGAAAGTTCACAAAGTCTTGTCATATGTGCTGATAAACGTGGGAACATTGCTCGCTTTATCAGTGGGATAAATAATCACACACAGGAAGGCAGGAAGAAGCAGAATTGCAAGTGTGTGAGATACAATGTAGATGGTGAGTGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCCAAGGGCGAGAGGCTTTACTATGACTATAATGGTCATGAGTATCAATACCCTACTCATCATTTTGTCTGA 1128 0.4858 MAPATTNSSPSAQRHVGFSRRTQAPRQLDEDSPPVKKCRLLSEIMARAPYAVVERESYSDLLCEQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCQGGKRVRTFSQKKIIDFFGIRRSSDDANDKRSSRDAKKRRKRSRPLVLHKKKRRLLPFVPTKDPAQRLKQMGSLASALTALNMEFSDHLTYMPGMAPRSANQATLENGGMQTLSKEDMETVEQCIAMSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDNRERDDCDSMMTLLLGAESSQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVDGECRVFLVATRDISKGERLYYDYNGHEYQYPTHHFV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01648 375 CDD SET_ATXR5_6-like 238 375 - -
Pumo10g01648 375 MobiDBLite consensus disorder prediction 131 153 - -
Pumo10g01648 375 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 140 373 - -
Pumo10g01648 375 SMART PHD_3 62 108 IPR001965 -
Pumo10g01648 375 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g01648 375 Pfam SET domain 239 363 IPR001214 GO:0005515
Pumo10g01648 375 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Pumo10g01648 375 Gene3D SET domain 146 375 IPR046341 -
Pumo10g01648 375 ProSiteProfiles SET domain profile. 241 363 IPR001214 GO:0005515
Pumo10g01648 375 FunFam Histone-lysine N-methyltransferase ATXR5 146 375 - -
Pumo10g01648 375 Pfam PHD-finger 63 108 IPR019787 -
Pumo10g01648 375 SMART set_7 242 369 IPR001214 GO:0005515
Pumo10g01648 375 SUPERFAMILY SET domain 235 366 IPR046341 -
Pumo10g01648 375 CDD PHD_RSF1 62 107 - -
Pumo10g01648 375 SUPERFAMILY FYVE/PHD zinc finger 50 113 IPR011011 -
Pumo10g01648 375 MobiDBLite consensus disorder prediction 1 33 - -
Pumo10g01648 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 121 IPR013083 -
Pumo10g01648 375 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01648 Pumo-Chr10 21686104 21690550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01648 58 129 C2H2 Transcription Factor Family AT3G01460 33.333 9.91e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo10g01648 SET 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01648 K24406 - gmx:100785817 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01648 10 21686104 21690550 Pumo10g01648 10 21686104 21690550 ECH