Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01644 ATGGTGCGAGTCAGAGACGATTTATGCATAACCGTTCCCAGTTTCTTCAAGTGCCCTATCTCCCTCGACGTGATGAAATCCCCTGTGAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGGCGGCAACAACACCTGCCCCGCTACCATGCAGGTCCTCCAAACCAAAGACTTCGTTCCCAACCGCACTCTCCAAAGCCTCATCCAGATCTGGTCCGATTCGGTTCGCCACCGAACCGTTTCCGAACCGGTCCTTTCCCCTGACGAAATCCTCCGAACCGTTGCCGACTTGGAAACCGACTCTCTCCGGTTCGGTGCGCTCGCGAAACTGCTCCACTTCGCCAGAGATTCTCACCAGAACAAACTCTTCCTCGCGAAATTAGAAGGCTTCGTGAATAAACTCGTTCGCTTCCTCGACAATGTCGACGGCGGAGTAACCGCGGGAACTAGTGTTGAATTTCTCGAACAAGTCGTTGTCGTGTTAGGTTTGGTTCTCGATAGCATCGAAGATCGCGAGGGATTGAAAAAGTCGATGCTGAAAGGAAAGAAACAAAACTTAGATTCTCTGCTTTTAGTTCTGCAACGAGGAAGCTCCGATTCGAAAATCGCCTCCGCTAGGGTTCTGCAGTTCATCGCCGTGGACGCGGAGTCGAAGCTTTTGATCGCGGAGAAGGACGGCGTGGTGGCCGGATTGCTTTCATCGGCGGCGCCGGAGAAAGATCCGGCGCTGGTCGAGCACGCGCTGGCGAGCCTGGTGGCGCTTTCTACGCCGAAGCGGAACAAATTGAAGCTGGTGAACCTCGGAGCGGTGAAGGCGATGTCGAGGCTGTTGACGGAGGCGAGTTTGGGGGCGGCGGGGGCGGAGAAGGTGCTGAAGCTGGTGGAAACGGCGTCGTCGACGAGGGAGGGGAGGAGGGAGATATGCGAGGACGCGGCGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGACCACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGTTATCTCTTTCGCGATCGTAAGGCGCAGGAAGCGGTGACGCAGAACAATGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGCGCGCCGCAGGGACCTGAAAATCTTTGCGAACATTCAGAACTTGTTCAAGCGTTTCTTGAACGAATTCGTGTCGCCGTGGTAGGCAGAATCTCCGTCGCAAAAGGTGGGACCGAGTTGCGGAGTCCTGTAGAATAG 1263 0.5645 MVRVRDDLCITVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDGGNNTCPATMQVLQTKDFVPNRTLQSLIQIWSDSVRHRTVSEPVLSPDEILRTVADLETDSLRFGALAKLLHFARDSHQNKLFLAKLEGFVNKLVRFLDNVDGGVTAGTSVEFLEQVVVVLGLVLDSIEDREGLKKSMLKGKKQNLDSLLLVLQRGSSDSKIASARVLQFIAVDAESKLLIAEKDGVVAGLLSSAAPEKDPALVEHALASLVALSTPKRNKLKLVNLGAVKAMSRLLTEASLGAAGAEKVLKLVETASSTREGRREICEDAACVAAVLSKVLKVSTTATEHAVTTLWSVCYLFRDRKAQEAVTQNNGLTKILLLMQSNCAPQGPENLCEHSELVQAFLERIRVAVVGRISVAKGGTELRSPVE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01644 420 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Pumo10g01644 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 92 IPR013083 -
Pumo10g01644 420 SUPERFAMILY RING/U-box 7 80 - -
Pumo10g01644 420 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Pumo10g01644 420 Gene3D - 95 409 IPR011989 -
Pumo10g01644 420 PANTHER WDSAM1 PROTEIN 11 379 IPR045185 GO:0061630
Pumo10g01644 420 SUPERFAMILY ARM repeat 108 375 IPR016024 -
Pumo10g01644 420 CDD RING-Ubox_PUB 13 65 IPR045210 -
Pumo10g01644 420 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Pumo10g01644 420 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01644 Pumo-Chr10 21622320 21624723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01644 5 378 U-box Gene Family AT5G64660 50.390 3.57e-123 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01644 - - gmx:100801033 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01644 10 21622320 21624723 Pumo10g01644 10 21622320 21624723 ECH
Pumo10g01644 10 21622320 21624723 Pumo6g00691 6 8668329 8669988 ECH
Pumo6g00691 6 8668329 8669988 Pumo10g01644 10 21622320 21624723 PCT