Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01638 ATGTATTCTGCTGCTACTTCCTTTACTTCACCACTCCTCCATGAGTTCCATTCAAGAAGGTTACTCATTCACTCCCCATATCTTAACCAATCGGCCAAGCCCCCAACAAGCAGCCACGATTCAACAGAAACATATCTTGGAGAAGGCAATTTCGATGCAAATGTTGTGATGGTACTCTCAGTCCTACTCTGTGCTCTTATCTGCTCACTGGGGCTAAACTCCATCATAAGGTGTGCTCTAAGATGTTCCAATTTTGTTGTGAGTGACTCAGTGGCAACCAATAATAACACTCCAGCAAGAGTGGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCTACAGTAAGTTACTCAACTGAGCTCAACCTGCCAAGTTTGGACTCAGAGTGTGTGATATGCTTGTCAGAGTTCACAAGTGGTGACAAGGTGCGCATTTTGCCAAAGTGCAACCACGGGTTCCATGTACGCTGCATTGACAAATGGCTAAGCTCACACTCATCATGCCCCAAATGCAGACAGTGCCTAATTGAGACCTGCCAAAAGATTGTTGGGTGCAGTCAACAACAAGCTAGCTCATCTCAATCTCAATCTCAATCTCAACAACCAGTGCCAGAAACCATTGTGACCATAGCCCCACTGGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTAGCTAA 687 0.4585 MYSAATSFTSPLLHEFHSRRLLIHSPYLNQSAKPPTSSHDSTETYLGEGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNTPARVANTGVKKKALKTFPTVSYSTELNLPSLDSECVICLSEFTSGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSQQQASSSQSQSQSQQPVPETIVTIAPLEPEGLVRNYRELS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01638 228 SMART ring_2 132 173 IPR001841 -
Pumo10g01638 228 PANTHER RING-H2 FINGER PROTEIN ATL78 13 220 IPR044602 GO:0016567|GO:0016740
Pumo10g01638 228 FunFam RING-H2 finger protein ATL73 92 179 - -
Pumo10g01638 228 CDD RING-H2_EL5-like 131 174 - -
Pumo10g01638 228 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pumo10g01638 228 Pfam Ring finger domain 131 174 IPR001841 -
Pumo10g01638 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 178 IPR013083 -
Pumo10g01638 228 SUPERFAMILY RING/U-box 110 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01638 Pumo-Chr10 21563654 21564738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01638 28 178 C3H Transcription Factor Family AT3G10910 46.795 6.92e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01638 K19040 - gmx:100787934 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01638 10 21563654 21564738 Pumo10g01638 10 21563654 21564738 ECH
Pumo8g01624 8 51579806 51581178 Pumo10g01638 10 21563654 21564738 ECH
Pumo6g00697 6 8764573 8765547 Pumo10g01638 10 21563654 21564738 PCT