Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01626 ATGAGATCCCTCCTCCGAAACCACCTCTTGCATTTGTCACGTTCTCCAGCTCGCACGTTCGTGATTCGGCTTCAAGCGTGCGAGTTGTCATCTTCATCTTCTTCTCCTTCTCCTCATAACTCCCGAGATGTGAGGGTTTCGGTGTGGTGGGATTTCAAGAACTGCGCGGTGCCAGATGACGTGGACGCTTGGAAGGTTGCACCCGCAATCGCGCAGGCTGTGAGAGCCAATGGGATCAAAGGTCCCCTTCATATCACCGCTTTCGGCAATGTTCAGCTCCTCTCCAAGCCCCACCAGGACGCACTTGCTTCCACCGGCATTCAATTCACCCACATTGCTGACGGTGGAAAGAATAGTGTCAACATTCTTGTTGAAATCATGTTTTGGGTATCTCAAAATCCTCCACCTGCACATCTCTTTCTGATATCTGGTGATAGAGGTTTTGCTTGCATATTACATCGGTTAAGAATGAATAATTACAATATCTTGCTTGCTGGCCCAAAGAAGGCTCCTGGTGTTCTCTCCAGTGCAGCAACTATAATGTGGCAATGGTCTTCATTGCTTAAGGGAGAAAATCTTTTTGGAAAACATTTCAACCATCCTCCTGATGGTCCATTTGGTTCTTGGTATGGAAACTTTAGGGTGACACTTGAAAACCCATTCCCAGCTGCGGAGCACTCTACATCTTTAGAAAATGTGGAGATCTATGAACCTTCCTTAGACTTAAAGTTAGGTGAAGTTCCAAAGTCAGTTGTACGGAAGGTTAAGCATATATTGAGCTCACATCCAAAAGGGATCTCCATTACAGATCTTCGTGCAGAGTTGGCAAAATGTGATGTGCATTTGGATAAAAGTTTATATGGATTTCAAAGTGTTTCACGCTTCCTATTATCAATCCCACACGTACAGCTCCAGCCTTTAGGGAATGGTAATTTTTGTGTATGTTTGGTCCCCTCAGAGTCCCCTGAACCTTCTGACAGTAGTGTTGTCCAATTAACATCATCTGCTGTTAAGAACGAGGAGAGGGGATATGCAAATGAGACTCCCTCAATTTCCACAGTCCATGCAAGGAGTATGAATGATGATTCAACATCATTCCAACCACCCCAAAATGAGTTGCAGAAATCTTCTCTGGCTAATGAGAAGGTTGTGGATGTGACTAATGCACAACAACCTGAGATTCAACAGCCATCCAAGGAAAACAAATTTTCCAAAACTAAGACAAGTTCCTTAAAAACTAGATCTAAAAAGTCATCTGACAATGACAATATTAAGTTTGAGGATGCAAATCATAAAATTATAGAAAAACATACCACTTCAGGGAATCACTGTGCTGGAAATGATCACACAACAATGGAAAACAATGGTGTTCCACATTATGAATTGGGAAATTTTAAAGCAAAGAACAAATATGAGAGTCCAACTAGAAACGAGGCTGATGAAGTTTGTTGCAGCTCATATTCTTCACCAGTTGATGACTCTCTGGTTGACAAAAGACTCAGTGGAATTGCTGAAACTTATAACAAAAGGCCAACATTCTTTAGCTGGATTAGTAGTTGGTGGCCATTTTGGAAAAGCAATGCAAAGTCTGATGATTTGGCTGCTCATCAGAACAAGGTGGTTAGTCACTTAGAGGATTCTAAGTTATCTGAAGTGGACCAGACTGTTCGTCATTTTGAAGAACCCAGGTTATCAGAACTGGACCAGAATTTTATTTGCTCTGGAAAGCCTGAGTTGTTTTCTAGTGGTTCCTTTTGGAAGGACTTGGAATCTTTTATTTTCTCGCCCAAAGGATCACTTCTTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACATAAATTACAAAAGGATGGACCCCCTGTTTTTAGATCTCTCACTGAAAAAGATATCCTTCAATTGGTGGAGTTATTAATATCAGAGAAAAAGTGGTTGGAGGAAAGCCCCTCCCAAACATTTCCTTTTAGGCTAACTCAACCAGTTCACAAGACCTCATTGATGGGCCAATCTCATGGTGCAAATGGCTTGAGATCTCTCTTTCTGAGCAGAGCACCAGAGTCCACGTTGGAAAAATCATCTGAACATGATGTGGAGAAACACAATCAGAGTATTCCTCATACTAGAGTTTCTGCAACTACCACTGAGACGAAATATACAGAGAGGTCTAGAAATGATATATTAGAAGATTGTCAGAAACTTGTGAGTGAGATATTGAGGGAACACCCAGAGGGTTATAGTATCAGTTCTTTCCCAAGACATTTTGTTGATAGGTATGGCTATCATCTTGATTTACAGAAGCTTGGTTACCAAAAGTTGGCAACCTTACTACAGATAATGCCGGAAGTTAAAGTAGAGTCCAATTATATTTATACTTCTGTTCCTGCTGTTAGTGCTTCTGAAGCGGAAACTTTTAATCTCAAAACTCAAGTAGCCAATGCTTGTCATGCTCATGCAATCTCGAACTCAGATAGTGAATTATCTGATTCATCCCCCAAAGATGATAACACGGAATCTCCATGGAGGAATTAG 2529 0.4152 MRSLLRNHLLHLSRSPARTFVIRLQACELSSSSSSPSPHNSRDVRVSVWWDFKNCAVPDDVDAWKVAPAIAQAVRANGIKGPLHITAFGNVQLLSKPHQDALASTGIQFTHIADGGKNSVNILVEIMFWVSQNPPPAHLFLISGDRGFACILHRLRMNNYNILLAGPKKAPGVLSSAATIMWQWSSLLKGENLFGKHFNHPPDGPFGSWYGNFRVTLENPFPAAEHSTSLENVEIYEPSLDLKLGEVPKSVVRKVKHILSSHPKGISITDLRAELAKCDVHLDKSLYGFQSVSRFLLSIPHVQLQPLGNGNFCVCLVPSESPEPSDSSVVQLTSSAVKNEERGYANETPSISTVHARSMNDDSTSFQPPQNELQKSSLANEKVVDVTNAQQPEIQQPSKENKFSKTKTSSLKTRSKKSSDNDNIKFEDANHKIIEKHTTSGNHCAGNDHTTMENNGVPHYELGNFKAKNKYESPTRNEADEVCCSSYSSPVDDSLVDKRLSGIAETYNKRPTFFSWISSWWPFWKSNAKSDDLAAHQNKVVSHLEDSKLSEVDQTVRHFEEPRLSELDQNFICSGKPELFSSGSFWKDLESFIFSPKGSLLVSQSKNREDMAHKLQKDGPPVFRSLTEKDILQLVELLISEKKWLEESPSQTFPFRLTQPVHKTSLMGQSHGANGLRSLFLSRAPESTLEKSSEHDVEKHNQSIPHTRVSATTTETKYTERSRNDILEDCQKLVSEILREHPEGYSISSFPRHFVDRYGYHLDLQKLGYQKLATLLQIMPEVKVESNYIYTSVPAVSASEAETFNLKTQVANACHAHAISNSDSELSDSSPKDDNTESPWRN 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01626 842 MobiDBLite consensus disorder prediction 821 842 - -
Pumo10g01626 842 MobiDBLite consensus disorder prediction 389 404 - -
Pumo10g01626 842 MobiDBLite consensus disorder prediction 389 426 - -
Pumo10g01626 842 MobiDBLite consensus disorder prediction 827 842 - -
Pumo10g01626 842 CDD PIN_limkain_b1_N_like 45 167 - -
Pumo10g01626 842 Pfam OST-HTH Associated domain 607 654 IPR025677 -
Pumo10g01626 842 MobiDBLite consensus disorder prediction 321 375 - -
Pumo10g01626 842 Gene3D - 246 322 IPR041966 -
Pumo10g01626 842 CDD LOTUS 248 316 - -
Pumo10g01626 842 Gene3D - 721 791 IPR041966 -
Pumo10g01626 842 Pfam NYN domain 45 178 IPR021139 GO:0004540
Pumo10g01626 842 PANTHER LIMKAIN B LKAP 29 737 IPR024768 GO:0005777|GO:0010468
Pumo10g01626 842 ProSiteProfiles OST-type HTH domain profile. 247 318 IPR025605 -
Pumo10g01626 842 CDD LOTUS 727 784 - -
Pumo10g01626 842 ProSiteProfiles OST-type HTH domain profile. 726 800 IPR025605 -
Pumo10g01626 842 Pfam OST-HTH/LOTUS domain 727 786 IPR025605 -
Pumo10g01626 842 Pfam OST-HTH/LOTUS domain 249 311 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01626 Pumo-Chr10 21367413 21377325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01626 44 190 C2H2 Transcription Factor Family AT5G61190 43.624 7.24e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01626 - - ccaj:109795685 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01626 10 21367413 21377325 Pumo10g01626 10 21367413 21377325 ECH