Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01625 ATGGCCACCAAATCAAGAAACACAACAGCCCCTAGCCCCAGCCCCGAACGGCAACCGCACCAACGCCGCGCCGCCGCAGCTGCCGCCGCTTCCCCGGCGACGCCGCAGTCTCTCGAAAACGACAACGCCGAAGACGGCGAGGATTTAGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTAGAGATTAAAGAGCTACTCGAAGAGCCTAACCAGTCTGAAGATTCTCTGGTGGAGTTGCTGCAAAGCCTCGCGGACATGGATATTACATTCCAAGCGTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGGCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAAACCTCAGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCAGCAGATTCCTGATTTTGCATACTCGCCCAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACACAAACCGAAAGTAATTCCCCGCAGTGAACCTAGGCCAAAACCCGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCCTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGGTGGAATTTTCATTTCCATAATTTTCATTTTCATGCTATGA 789 0.5184 MATKSRNTTAPSPSPERQPHQRRAAAAAAASPATPQSLENDNAEDGEDLDPYGGLFDDEQKKILEIKELLEEPNQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLKPQGGSNTLMADGDSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRPKPAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAENGGIFISIIFIFML 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01625 262 ProSiteProfiles TFIIS N-terminal domain profile. 58 135 IPR017923 -
Pumo10g01625 262 MobiDBLite consensus disorder prediction 186 200 - -
Pumo10g01625 262 CDD TFIIS_I 60 133 - -
Pumo10g01625 262 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 57 144 IPR035441 -
Pumo10g01625 262 Coils Coil 230 250 - -
Pumo10g01625 262 Pfam TFIIS helical bundle-like domain 83 132 IPR017923 -
Pumo10g01625 262 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 42 250 IPR044790 -
Pumo10g01625 262 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 145 IPR035441 -
Pumo10g01625 262 MobiDBLite consensus disorder prediction 146 185 - -
Pumo10g01625 262 MobiDBLite consensus disorder prediction 141 232 - -
Pumo10g01625 262 MobiDBLite consensus disorder prediction 1 16 - -
Pumo10g01625 262 MobiDBLite consensus disorder prediction 1 55 - -
Pumo10g01625 262 SMART TFS2_5 63 134 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01625 Pumo-Chr10 21361086 21362862 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pumo10g01625 Med26 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01625 - - gmx:100804034 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01625 10 21361086 21362862 Pumo10g01625 10 21361086 21362862 ECH
Pumo10g01625 10 21361086 21362862 Pumo6g00709 6 8892790 8895679 ECH
Pumo6g00709 6 8892790 8895679 Pumo10g01625 10 21361086 21362862 PCT