Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01620 ATGCAGACAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCCAAATATGGACGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACATGCAATGCACACAAGGTGGTTTGCAGGCAGAATGATATCTGCTATCTTCATGCAACCTCAGATTTATGAAACCAAGTTTAAAGGGGGCGCTTGA 252 0.4087 MQTEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQHAMHTRWFAGRMISAIFMQPQIYETKFKGGA 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01620 83 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 65 IPR000504 GO:0003723
Pumo10g01620 83 SUPERFAMILY RNA-binding domain, RBD 9 71 IPR035979 GO:0003676
Pumo10g01620 83 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 79 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pumo10g01620 83 Gene3D - 1 82 IPR012677 -
Pumo10g01620 83 CDD RRM3_RBM39_like 3 70 - -
Pumo10g01620 83 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 72 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01620 Pumo-Chr10 21276382 21277992 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01620 K13091 - gmx:100802446 159.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00718 6 8986428 8992927 Pumo10g01620 10 21276382 21277992 ECH
Pumo10g01620 10 21276382 21277992 Pumo10g01620 10 21276382 21277992 ECH
Pumo6g00718 6 8986428 8992927 Pumo10g01620 10 21276382 21277992 PCT