Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01619 ATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACTAGTGGGGCTGCTGGGGTAGTAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTGGGGAACCTTCACTTCAACATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTCGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTGCCCATTGTGAATGGGTCAACTCCTGCTCAACAGGCCGTTATGCCTATTGGTAATCCAGGTATAATATCAGCAGTAGCACCAGCTGTCCCAACACAAATTATGCCTACCCCAGTGACTGAACCCTGTTGGAAACCCCACTGA 666 0.461 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPIVNGSTPAQQAVMPIGNPGIISAVAPAVPTQIMPTPVTEPCWKPH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01619 221 Gene3D - 47 143 IPR012677 -
Pumo10g01619 221 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 194 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pumo10g01619 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Pumo10g01619 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Pumo10g01619 221 SUPERFAMILY RNA-binding domain, RBD 10 129 IPR035979 GO:0003676
Pumo10g01619 221 FunFam Splicing factor CC1-like 34 140 - -
Pumo10g01619 221 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 144 212 IPR029123 -
Pumo10g01619 221 CDD RRM2_RBM23_RBM39 53 130 - -
Pumo10g01619 221 SMART rrm1_1 52 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01619 Pumo-Chr10 21274495 21276266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01619 35 124 Eukaryotic Initiation Factors Gene Family AT4G34110 39.560 1.59e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01619 K13091 - gmx:100802446 408.297