Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01615 ATGAACAACCCTGCATTGTCAAGGCTACTTCCGGGTATGAATAGGGAGAGGGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTGGTCTCCGGAGAGGTTCCAACCGCTGCTGATCCTGATGATGCTGTTACACCAAACATGCCTTCTACAATAGTAACACCTTCTTCATCTACTTTTGTCGTTGGCACCTCTTCTCTCAAGAGAAATAGAGAACATCATGATGATACATGTAATACATCCTTCTCACATCCACCTTCATCATCCCCTTCTTCTATGCCAACAACAACCAACAGAGGTGCAGAATGTTCAAACAGTACAGCAAGAGAAACAAGGCAGATGGGTAACGCAGTGTACGAATACAGAACAACAGAAAATGCAACAAGGGACGAGGGAAGGAGAAAATACAGAGGTGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCATTCAAAGCTGCAAGAGTATGGTTAGGGACATTCGACACAGCAGAGGCAGCAGCTAGAGCCTACGATGAAGCAGCGCTTCGTTTCAGAGGCAACAAGGCCAAGCTCAACTTCCCTGAGAATGTCACTCTCCGCCAACCTCAGTTCACTATTTCCAATTCTCCTACTTCTCTCGCGTCCATCACAACGTCCACCGATCCGGTTGTTCACACTCGACCTCTTCTTCTCCCTTCTTCTCAGGCTGCAACTAACTTTTACGATTATTTTCAATTCTCGGGCTTCCCCACCAACACCAACCTTTATTATGATCATAGTATGTTTGTGCCGTCTGCTACCATGGCTGCGGCTTCTCATCTTCAATCTTCGTCATCGTCTTCTTCTTCTTCTTCTGTGTTTGTTTCCTCTATAACTTCTCCTCAGGACACTTTACTTTCTTCATTGTATTCTGGCCAGTTGCCGCCGTGGTCGGCCTCTGGTCATAGCTCTTCTTCCTCCGGATGA 960 0.476 MNNPALSRLLPGMNREREMSAMVSALTHVVSGEVPTAADPDDAVTPNMPSTIVTPSSSTFVVGTSSLKRNREHHDDTCNTSFSHPPSSSPSSMPTTTNRGAECSNSTARETRQMGNAVYEYRTTENATRDEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPQFTISNSPTSLASITTSTDPVVHTRPLLLPSSQAATNFYDYFQFSGFPTNTNLYYDHSMFVPSATMAAASHLQSSSSSSSSSSVFVSSITSPQDTLLSSLYSGQLPPWSASGHSSSSSG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01615 319 Gene3D AP2/ERF domain 134 194 IPR036955 GO:0003700|GO:0006355
Pumo10g01615 319 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Pumo10g01615 319 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Pumo10g01615 319 FunFam Ethylene-responsive transcription factor 2 134 193 - -
Pumo10g01615 319 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Pumo10g01615 319 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Pumo10g01615 319 PANTHER DNA-BINDING DOMAIN 94 286 IPR044808 GO:0003700|GO:0009873
Pumo10g01615 319 MobiDBLite consensus disorder prediction 80 123 - -
Pumo10g01615 319 MobiDBLite consensus disorder prediction 69 136 - -
Pumo10g01615 319 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Pumo10g01615 319 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Pumo10g01615 319 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01615 Pumo-Chr10 21241193 21242595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01615 129 197 AP2-EREBP Transcription Factor Family AT5G61890 79.167 1.33e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g01615 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01615 - - gmx:100796247 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01615 10 21241193 21242595 Pumo10g01615 10 21241193 21242595 ECH
Pumo6g00720 6 9007934 9009930 Pumo10g01615 10 21241193 21242595 ECH