LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g01610	ATGGGATGCGTTTGTGGCAAGTTTTCTCCCCCTCGCAATGCTGTGAGGCCAAAACGGCAAGTGAAGAGAGTTGCAAGCAAGAACGGTTCGAGGACTACACGTTCCTCTAAGGATGTGGAAGAGGGGGTGAAGAGGGAGACTCAGAAGGATTCAGCTGCTAAGAGAGATGGAAATGATGTTGTAGGAGGAGGAGGAGAAAAGGAAAAACCGGTTGCTGCTAAAAAAGACAAGAGTAAGGTATGGGACGGTGTTGCTAAAGAAAATAATAAGAGTAAAGTTAAGGATGCTGAGGAAAAGAAGATGGCCAGATATGAATTTGTGGACGGGTGGCCAAAGTGGTTAGTCGATAATATCCCCACAAATGTTTTGGCTAAGATTGTTCCCAAGAGTGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAATGTATACAAAGCAAGAGAAAAGGGCACAGGAAGGGTTGTTGCTTTGAAGAAGGTACGGTTTGACACATCGGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATCATGATACTGCAGACTTTGGATCACCCCAATGTCATCAAACTCAAAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTGGTTTTTGACTTCATGCAGTCTGATCTCACCCGAATTATCTCCCGACCCGGGGAGAAACTCACCGAACCACAGATCAAGTACTATATGCAGCAGCTTCTTTCTGGCCTCCTGCACTGTCACGAGAGGGGAATTATGCACCGAGATATTAAGGCTTCTAACTTGTTAATAGACAGGAGAGGGGTGCTGAAAATTGCGGATTTTGGGCTTGCAACTTCCATTGAAGCTGAAAGGCCTCTTACAAATAGAGTGGTGACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCGACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTGTTGGCCGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGAACAGAGGTTGAACAGATTCACATGATCTTCAAACTTTGCGGTTCTCCTTCAGAGGATTACTATAAAAAACTGAAGCTAACAACAAGCTACCGGCCTCCACAACATTACAAACCTAGTTTCCAAGAAAACTTCCATAAGTTCCCTTCCTCTTCCCAGGGTCTCTTAGCTACCCTTCTTGATCTCAACCCTGCACTTCGTGGCAGTGCTGCCTCTGCTCTCCAAAGTGATTTCTTCAAATGTAGTCCATTAGCATGTGACCCTTCGGCTTTGCCTGTAATCAACATAGACGAGGATGAACGCTTACAAACTAAGAGAGGCAAAAGGCCAAGGGTTTCTAAAAAAGGGCAATCATCTCAAACAAGTAGAAGTGATGCTGGTCAGTCAGAAAAGGACCAAATCACTGAACAACCCCGTGAAGATACAGAATCGTCAAAAGAGAACTCACAGAAGTACATGGAACAATACAAGCAAGGTCAAGAAACAGGGACTAGTGCTACTAGCAGCACATCATCAGGCTCAAGACTCTTCATGACCGAAGGGAGCACGAATACATCTATGTCCCCAGTTTTTCTCTCTAGTGGTAGTGTGAGAAAATCTCCCAAAACAGAGGGCCACCCCAATGCTCTTAAGAACATAAAGAACTATAGTGCTCTCTTACAACAGGCCTCTATGATTGATATAATCAACCGCAATGAAGGCAACGAATTTCCTCAGCTTCGTAAATCCTTCTCTGCGTTGGATGTTCGACTTGATCCTGAGAAGCTATCAAGCTTCTATGACTTACCTAATAAACAGATTTAA	1809	0.4406	MGCVCGKFSPPRNAVRPKRQVKRVASKNGSRTTRSSKDVEEGVKRETQKDSAAKRDGNDVVGGGGEKEKPVAAKKDKSKVWDGVAKENNKSKVKDAEEKKMARYEFVDGWPKWLVDNIPTNVLAKIVPKSADSYEKLAKIGRGTYSNVYKAREKGTGRVVALKKVRFDTSDSESIKFMAREIMILQTLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGEKLTEPQIKYYMQQLLSGLLHCHERGIMHRDIKASNLLIDRRGVLKIADFGLATSIEAERPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIHMIFKLCGSPSEDYYKKLKLTTSYRPPQHYKPSFQENFHKFPSSSQGLLATLLDLNPALRGSAASALQSDFFKCSPLACDPSALPVINIDEDERLQTKRGKRPRVSKKGQSSQTSRSDAGQSEKDQITEQPREDTESSKENSQKYMEQYKQGQETGTSATSSTSSGSRLFMTEGSTNTSMSPVFLSSGSVRKSPKTEGHPNALKNIKNYSALLQQASMIDIINRNEGNEFPQLRKSFSALDVRLDPEKLSSFYDLPNKQI	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g01610	602	SMART	serkin_6	134	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g01610	602	FunFam	probable serine/threonine-protein kinase At1g54610	121	216	-	-
	Pumo10g01610	602	MobiDBLite	consensus disorder prediction	449	463	-	-
	Pumo10g01610	602	Pfam	Protein kinase domain	134	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g01610	602	Gene3D	Phosphorylase Kinase; domain 1	122	216	-	-
	Pumo10g01610	602	Gene3D	Transferase(Phosphotransferase) domain 1	217	454	-	-
	Pumo10g01610	602	MobiDBLite	consensus disorder prediction	464	485	-	-
	Pumo10g01610	602	SUPERFAMILY	Protein kinase-like (PK-like)	127	417	IPR011009	-
	Pumo10g01610	602	MobiDBLite	consensus disorder prediction	1	79	-	-
	Pumo10g01610	602	ProSiteProfiles	Protein kinase domain profile.	134	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g01610	602	MobiDBLite	consensus disorder prediction	432	544	-	-
	Pumo10g01610	602	FunFam	Putative serine/threonine-protein kinase	217	452	-	-
	Pumo10g01610	602	CDD	STKc_CDK9_like	134	414	-	-
	Pumo10g01610	602	MobiDBLite	consensus disorder prediction	33	79	-	-
	Pumo10g01610	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	254	266	IPR008271	GO:0004672\|GO:0006468
	Pumo10g01610	602	MobiDBLite	consensus disorder prediction	486	536	-	-
	Pumo10g01610	602	ProSitePatterns	Protein kinases ATP-binding region signature.	140	163	IPR017441	GO:0005524
	Pumo10g01610	602	PANTHER	CELL DIVISION PROTEIN KINASE	132	420	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g01610	Pumo-Chr10	21192219	21198120	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g01610	129	441	Core Cell Cycle Gene Families	AT5G10270	46.246	1.16e-92	292

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pumo10g01610		Pkinase	6.1e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g01610	K08819		-	gmx:100782603	914.45