Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01607 ATGATGTCAACAACGTCTCAAACTAATGTTAACCATAGCTTGTTTGAAGAGCAAGATCAGATCCCTACGCAGATGGGGTTCAATAATATTCCTTTCCCACCAAACCAAACCTACCCTCCTCCTTTGGGTTGCCATCAATCTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGAGCCTGCTTCTTCTGCTGCAAATTTTGCTGAAGCCCTACTTTCAACCGCAGTTCAAAGACCACGAGAAGATCTCACTTCAAGTTTGGTAGGAGCAGGAGGAGGCCACCTTCTTTCCTTGAACAGATCGAGAGTGAATTCATGGGCATGGGAAGAAGTAAGCGATTGCTTGATGGGTAAGAGAATTGGAGGAGTTGATAATCATCATCATCTAGGGGCTTCTGCTATGAAGATGAAGAAAATGAAGGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCACCCAAGAAGCTACTACCGTTGCACCCAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGTTTGGCGGAGGATCCAAGGATGGTGATAACAACATATGAAGGGAGACATGTGCACTCGCCATCAAATGAACTTGAAGACTCGCAAACCCCTTCTGAACTTAGTAATTTCTTGTGGTAG 723 0.4495 MMSTTSQTNVNHSLFEEQDQIPTQMGFNNIPFPPNQTYPPPLGCHQSLKSISAIAPSLSSEPASSAANFAEALLSTAVQRPREDLTSSLVGAGGGHLLSLNRSRVNSWAWEEVSDCLMGKRIGGVDNHHHLGASAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQTPSELSNFLW 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01607 240 FunFam WRKY transcription factor 57 149 223 - -
Pumo10g01607 240 Pfam WRKY DNA -binding domain 164 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01607 240 SUPERFAMILY WRKY DNA-binding domain 155 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo10g01607 240 MobiDBLite consensus disorder prediction 225 240 - -
Pumo10g01607 240 Gene3D WRKY domain 150 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo10g01607 240 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01607 240 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 38 224 IPR044810 GO:0003700
Pumo10g01607 240 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01607 240 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01607 Pumo-Chr10 21119187 21122860 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01607 133 240 WRKY Transcription Factor Family AT4G39410 77.876 2.99e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo10g01607 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01607 - - gmx:100127389 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01607 10 21119187 21122860 Pumo10g01607 10 21119187 21122860 ECH