Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01601 ATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGGAGGGCGCAGTCTGTGGACCTTGATGAGGTTGATGCCAAGATAAGTAAGTTGATGCCTGAGCTCGGTTTTGCTCCTGAGGATTCTGATAGGTTGGTTGCGTCTTTCAGTGGAGGGTGGCAGATGAGGATGTGTCTCGGCAAGATTCTACTTCAGGAGCCTGATTTGTTGCTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGACTATCTTAACCAGCAGGATGTGCCAATGGTTATCATTTCCCATGACCGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACGTTTGAAGGAAATTATTCTCAGTATGTAATTTCAAAAGCAGCATGGATTGAAGCACAGTATGCTGCGTGGGAGAAGCAGCAGAAAGAAATTGAGCATACAAGAGACTTGATAAGTAGATTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCTTCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTGGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAGCAATTAAGAACTTGGAATTTGGCTTTGAGGATATGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTTGGGGAGCATAATGTATTACCCAACTATTTTGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAAACAGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGGCTTCTTGGGCGTTGTAATTTTAAAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAGGCAATAACTGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTGATAGAAATTAATGATGGCACTATACAGGATTATGCAGGTGATTACGATTATTATTTAGAGAAGAACCTTGATGCTAGGGATAGAGAACTTGAACGCGAGGCAGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAGGAAGCACGGAAGAAACAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCTAAAGGCGCGAAAAATGCGAAGAGATGGAATTAA 1443 0.4248 MGRLLDEFDLLQRRAQSVDLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEHTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAIKNLEFGFEDMTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYQGTVITVSHDRYFIKQIVNRVIEINDGTIQDYAGDYDYYLEKNLDARDRELEREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGAKNAKRWN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01601 480 MobiDBLite consensus disorder prediction 430 480 - -
Pumo10g01601 480 SMART AAA_5 237 405 IPR003593 GO:0016887
Pumo10g01601 480 Pfam ABC transporter 229 360 IPR003439 GO:0005524
Pumo10g01601 480 ProSitePatterns ABC transporters family signature. 332 346 IPR017871 GO:0005524|GO:0016887
Pumo10g01601 480 Pfam ABC transporter 13 76 IPR003439 GO:0005524
Pumo10g01601 480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 213 428 IPR003439 GO:0005524
Pumo10g01601 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 419 IPR027417 -
Pumo10g01601 480 Gene3D - 1 167 IPR027417 -
Pumo10g01601 480 MobiDBLite consensus disorder prediction 430 460 - -
Pumo10g01601 480 CDD ABCF_EF-3 215 405 - -
Pumo10g01601 480 Gene3D - 175 443 IPR027417 -
Pumo10g01601 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 122 IPR027417 -
Pumo10g01601 480 Coils Coil 440 469 - -
Pumo10g01601 480 FunFam Putative ABC transporter ATP-binding component 3 171 - -
Pumo10g01601 480 Pfam ABC transporter 115 202 IPR032781 -
Pumo10g01601 480 FunFam ABC transporter ATP-binding protein 173 440 - -
Pumo10g01601 480 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 4 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01601 Pumo-Chr10 21044992 21049070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01601 210 430 Calmodulin-binding Proteins AT2G36910 25.911 2.26e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01601 - - gmx:100797121 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01601 10 21044992 21049070 Pumo10g01601 10 21044992 21049070 ECH