Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01576 ATGCTATACGACAATGGTTTTAGTCCTCAATTTTCTGAATTCATATGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCATCTCAAATCGGAAGAAGACACATGTTAGGCCCTCCTGGAACCCTAAACACTATCACCCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTTTTTGGTGCTAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAGAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCTAATGTGAGGATAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTTAATGCAGTGAGGGCTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCCTCTCATCATGTTGCAATGCTCCCTTCTTCTGGGGCTGTTTCAATTGCTGCTCCACCGCCACCACCTCCTCCACCACCACCACCTCCTCCTTCTCTTCCTCAAACTTCTTCCTCTCCTTCCATGTACATCCAACACAGGGATCCCACCACTTATACCACAATTTCAAGTGATAATATTTCCTATTTTGGTTAA 690 0.4362 MLYDNGFSPQFSEFIWERFDEIGKKIKREGDVSSQIGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRIRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLREANMIPSSHHVAMLPSSGAVSIAAPPPPPPPPPPPPPSLPQTSSSPSMYIQHRDPTTYTTISSDNISYFG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01576 229 MobiDBLite consensus disorder prediction 180 201 - -
Pumo10g01576 229 Pfam Lateral organ boundaries (LOB) domain 53 150 IPR004883 -
Pumo10g01576 229 Coils Coil 132 159 - -
Pumo10g01576 229 MobiDBLite consensus disorder prediction 177 229 - -
Pumo10g01576 229 MobiDBLite consensus disorder prediction 202 229 - -
Pumo10g01576 229 ProSiteProfiles LOB domain profile. 52 153 IPR004883 -
Pumo10g01576 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 49 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01576 Pumo-Chr10 20799553 20800570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01576 38 229 AS2 family AT2G40470 72.362 2.23e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo10g01576 LOB 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01576 - - gmx:100790799 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01576 10 20799553 20800570 Pumo10g01576 10 20799553 20800570 ECH
Pumo1g00338 1 4982762 4989154 Pumo10g01576 10 20799553 20800570 ECH