Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01569 ATGGGAACCGTTAGTAACATTGGCTTCCCTTCAGTATTCAGAGTTCCTCTAGATTCACAAGTACTATCAAAGCAGATGAAGAATAAATCATCGTGCGGTTTTATGGTTCCTCTTTATCCTAACTACTCTGTTAGGCTGAGTCCAATACGTTGTAAACTATCAGAAAGTGGGATTGAGGAGAAGGAGAAGGAGAACTCCACGAGCACGAGCAAGAGGCCCTCTAAGACCAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAGAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTCAGTATGAATTATACTCTTATTACGGACAACTTGATTGTGGGCTCCCAACCACAGAAACCCGAAGACATAGATCACCTCAAAAAGGAAGAGGGTGTGGCATACATTCTAAACTTGCAACAGATAAGGATGTTGAGTATTGGGGAATAGACTTGCAGTCAATAAGAAGAAGGTGTCGTGAACTTGAAATTAGCCACACGAGGAGACCGGCAAAAGACTTTGATCCAGACTCCTTGCGAAATGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACTGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAGTCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAATCTTCCAGAATATGCATTTGAGGATATAGCAGACTGGGAAAGGAACTTGATTCAAGATCGTGTCCGCTCCCTTCGTGGAACTTGA 888 0.4245 MGTVSNIGFPSVFRVPLDSQVLSKQMKNKSSCGFMVPLYPNYSVRLSPIRCKLSESGIEEKEKENSTSTSKRPSKTKDRMEEYNIAMKRMMRNPYEYHHDLGQYELYSYYGQLDCGLPTTETRRHRSPQKGRGCGIHSKLATDKDVEYWGIDLQSIRRRCRELEISHTRRPAKDFDPDSLRNELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMSLNEAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFENLPEYAFEDIADWERNLIQDRVRSLRGT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01569 295 Gene3D Protein tyrosine phosphatase superfamily 88 295 IPR029021 -
Pumo10g01569 295 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 153 247 IPR029021 -
Pumo10g01569 295 SMART dsp_5 118 255 IPR020422 GO:0006470|GO:0008138
Pumo10g01569 295 Pfam Dual specificity phosphatase, catalytic domain 163 245 IPR000340 GO:0008138|GO:0016311
Pumo10g01569 295 CDD DSP_laforin-like 140 251 IPR045204 GO:0019203
Pumo10g01569 295 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 87 295 - -
Pumo10g01569 295 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 182 241 IPR000387 GO:0016311|GO:0016791
Pumo10g01569 295 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 48 102 - -
Pumo10g01569 295 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01569 Pumo-Chr10 20702217 20704780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01569 29 295 Protein tyrosine phosphatase (PTP) family AT3G10940 60.662 5.67e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01569 - - gmx:100787079 457.603