Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01553 ATGGCCATTGTTGTAGCAACCTCTCTTCTCTTCTTTCTTCTTAATTTATGCCTCAGAGGCACTTATGGTGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTTTATGGTGGGGGTGATGCATCAGGCACAATGGGAGGGGCTTGTGGTTATGGCAATTTGTACAGCCAAGGGTATGGTACTAACACTGCAGCACTCAGCACGGCTCTATTCAACAATGGCTTGAGTTGCGGGTCTTGCTATGAGATGAAATGTGACAGTGACCCCAAATGGTGCCTCCCCGGTAGCATAATCGTCACTGCCACAAACTTCTGCCCTCCTAACCTTGCATTGGCTAATAACAATGGTGGCTGGTGCAACCCTCCTTTGCAACACTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAGAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTCCCCTGTGTGAAGAAAGGAGGGATCAGGTTCACCATCAATGGCCACTCTTACTTCAACTTGGTTCTGGTCACAAATGTTGGTGGAGCTGGAGATGTTCATTCTGTGTCCATCAAAGGGTCTAGGACTGGGTGGCAAACCATGTCTAGAAACTGGGGGCAGAACTGGCAAAGCAATTCCTACCTCAATGGCCAAAGCCTCTCTTTTCAGGTCACCACAAGTGATGGCAGGACTATCACTGGCAACAACATTGTGCCTGCTAACTGGCAATTTGGACAAACATTTGAAGGGGCACAGTTCTAG 756 0.4788 MAIVVATSLLFFLLNLCLRGTYGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCDSDPKWCLPGSIIVTATNFCPPNLALANNNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITGNNIVPANWQFGQTFEGAQF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01553 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Pumo10g01553 251 CDD DPBB_EXPA_N 33 154 - -
Pumo10g01553 251 Gene3D - 19 154 IPR036908 -
Pumo10g01553 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Pumo10g01553 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Pumo10g01553 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Pumo10g01553 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Pumo10g01553 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Pumo10g01553 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Pumo10g01553 251 FunFam Expansin 159 251 - -
Pumo10g01553 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Pumo10g01553 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Pumo10g01553 251 SUPERFAMILY Barwin-like endoglucanases 10 177 IPR036908 -
Pumo10g01553 251 Gene3D - 158 251 IPR036749 -
Pumo10g01553 251 SMART dpbb_1 64 149 IPR007112 -
Pumo10g01553 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Pumo10g01553 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Pumo10g01553 251 PANTHER EXPANSIN-A15 9 251 IPR002963 GO:0009664
Pumo10g01553 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Pumo10g01553 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Pumo10g01553 251 FunFam Expansin 19 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01553 Pumo-Chr10 20538799 20540591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01553 8 251 Expansin Gene Family AT2G40610 80.816 3.14e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01553 - K20628 gmx:100807183 499.59