Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01552 ATGTCGTTCCCTCACCACCGTCGATCTCAATCGGAGATGCATTTCCGGATCACCGACGACTTCGACCTCGAAGTGGATCTCTCTCCGCCGCCGGATTTCCAAGATCCCACCCCGCTCAAGGAATCCGACTCCAAACCCCATTCTCCGCAACCCGAAACCGCCCGCTCCGGTCACCGCCGAAGCAATTCCGCCGATGCATCTTCGTCCTCGCCGTTGGAAGGCATTGAGGCCAAGAAGGCCTTGTCCCCCGATAAACTCGCTGAATTGTGGACCGTTGATCCCAAACGAGCCAAGAGGATTCTGGCTAACCGTCAATCCGCGGCGCGCTCTAAAGAGAGGAAAGCTTGTTATGTGACGGAGCTTGAAAGAAAATTTCAATCTCTTCAAACGGAAGCAACCGCTCTTTCTGCTCAATTAAGTCTCTTCCAGAGAGATACAACTGGTCTGACTACAGAAAATACGGAGTTGAAGCTTAGGTTACAAGCCATGGAACAACAAGCTAAGTTATGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTTGATAGGCTCAGGATTGCAACTGGAGAGAGAGTAATGCATGCTGATACCTATGGTTTGGGAATGCATCAACTTACATATTCTCAAGCTCCGTTCTTCTCACATCAGTCACAACATGGGCAGAGTGAATTTCAGGCCATGCAAATGCCGCAGTTGCATTCATTCTCATCTAATGTGTCTACTTCCCATGAGCCTCTGTTTGATCTCGACATTCCCTATGATTTGTCAGAAATGTTGTCAAGTGAATCTATCGGCCAATTTCAGGGGCTGGACATAGGCCACGGGGTTCCTCATGTTCTGATGTCAGATTGTCCCTCCATTTCTGTTAATAAAATCAACAATGCCTTTTGA 891 0.4815 MSFPHHRRSQSEMHFRITDDFDLEVDLSPPPDFQDPTPLKESDSKPHSPQPETARSGHRRSNSADASSSSPLEGIEAKKALSPDKLAELWTVDPKRAKRILANRQSAARSKERKACYVTELERKFQSLQTEATALSAQLSLFQRDTTGLTTENTELKLRLQAMEQQAKLCDALNEALKKEVDRLRIATGERVMHADTYGLGMHQLTYSQAPFFSHQSQHGQSEFQAMQMPQLHSFSSNVSTSHEPLFDLDIPYDLSEMLSSESIGQFQGLDIGHGVPHVLMSDCPSISVNKINNAF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01552 296 MobiDBLite consensus disorder prediction 55 70 - -
Pumo10g01552 296 Pfam bZIP transcription factor 95 147 IPR004827 GO:0003700|GO:0006355
Pumo10g01552 296 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 236 - -
Pumo10g01552 296 MobiDBLite consensus disorder prediction 38 54 - -
Pumo10g01552 296 MobiDBLite consensus disorder prediction 1 78 - -
Pumo10g01552 296 SUPERFAMILY Leucine zipper domain 95 149 IPR046347 GO:0003700|GO:0006355
Pumo10g01552 296 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 93 156 IPR004827 GO:0003700|GO:0006355
Pumo10g01552 296 Gene3D - 94 146 - -
Pumo10g01552 296 Coils Coil 160 180 - -
Pumo10g01552 296 CDD bZIP_plant_RF2 96 145 IPR044759 GO:0003700|GO:0006355
Pumo10g01552 296 MobiDBLite consensus disorder prediction 7 23 - -
Pumo10g01552 296 Coils Coil 118 138 - -
Pumo10g01552 296 SMART brlzneu 91 155 IPR004827 GO:0003700|GO:0006355
Pumo10g01552 296 FunFam probable transcription factor PosF21 94 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01552 Pumo-Chr10 20526934 20530907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01552 4 272 bZIP Transcription Factor Family AT2G40620 48.580 3.60e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo10g01552 bZIP_1 3.4e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01552 - - gmx:100807712 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01552 10 20526934 20530907 Pumo10g01552 10 20526934 20530907 ECH