Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01551 ATGGCTCTTCACCACCGCTTGTTGCTAGACACAAATTCAAGCTCGCCTGCACCAAGCAGCATGAATAGGACAAGAGAAACTTTCACAGGTGATGCAAATTTTGACACCAACATGGTGATTATCTTGGCCGCGTTGCTTTGTGCACTTATATGTGCTTTGGGGCTCAACTCAATTGTACGATGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAGACCCCAGAGGAGACTGCAGCACGTTTGGTGGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGCTAGTATTGCAGCCACAGATTGTCCAATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAATTGCAGACAATCTTTGCTTGAGCAGCCAACTATTTCTGGAGCTGTAGCTGCAGGAACTAGTCACCATGCATTGGGAGGACATCAACATGAGTCTTTAGCTGTGGCTGTGGAAGTGGTTGGCTAA 576 0.4635 MALHHRLLLDTNSSSPAPSSMNRTRETFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSASIAATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTISGAVAAGTSHHALGGHQHESLAVAVEVVG 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01551 191 CDD RING-H2_EL5-like 110 153 - -
Pumo10g01551 191 SUPERFAMILY RING/U-box 110 159 - -
Pumo10g01551 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Pumo10g01551 191 PANTHER RING-H2 FINGER PROTEIN ATL78 11 160 IPR044602 GO:0016567|GO:0016740
Pumo10g01551 191 MobiDBLite consensus disorder prediction 8 24 - -
Pumo10g01551 191 SMART FANCL_C_2 107 160 - -
Pumo10g01551 191 Pfam Ring finger domain 110 153 IPR001841 -
Pumo10g01551 191 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Pumo10g01551 191 SMART ring_2 111 152 IPR001841 -
Pumo10g01551 191 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01551 Pumo-Chr10 20520954 20522999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01551 6 161 C3H Transcription Factor Family AT3G10910 61.818 9.96e-63 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01551 - K19040 gmx:100787273 351.288