Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01548 ATGGAACATGCGGAAAAATGCACAACCATGACGACTAATGTCCCATCCCAACGACGTCGTTCCATAACGAGCAAAAACGACTCGTCGTACAATGAATCTCCCAGCGGCATCTGGGAGAAAGAAAGAAAGAAGACACTCCCCCTCGCGGCGAGTGTGAACGAGAACAACACTCCAATCCCCTCTCCACCAAACCGAAACGACGCCGTTCGCAGCAAGCACAGTTTCCAAACCCTAGCTCCCATGTCCTCCGAAGACATCACTCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAATTCCCCTCTTGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCGCCCCGCAGCGCCGGGTCGGGGACCCGGGTCCCAAGACCCGCGAACTCGGCGCCTTCATCGACGACAAGATGTTCATCGACCGCGACCACCGCTTCTTCGCCGCCCAGAACCCCGAGTTCCGCCGCTACGCCGACTGCTCCGCCCGCCGCGACCCCCGCAGTTGGAGCGCCAACGGCGGCGCCGCCACTCCCAGCGAGGACGACGAATCCGACGACGACGACGAAGATGACGACGACGACGAGGACGACGAAGGCGACACCGAAGTAGAAGGACTCGTCGGTGACGGAACCAAAAGCGAAATTAACAATAACATTAACAACAACAACAACAACAACGGTGGCAGTAATTTATCTGCTGTTGCAAACGGGAAAGCCCACTCTTACGTTTCTGGAAGAGAGCTATTGGTGAAGGATGGTGGAGACATTGGGCAATTGGTGCATAGCAATGTGAGTGGTGGTGATGAGGATCACCGGCAAGAGGGGTTTGGTAAGTCTCAGAATTCTGTTAACGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGCGGCGAAGGGGGTTCTGGGCACAAAGTTATGGTGGATGACAGTGGTTGTGGGTTTAGTGGGAGAAAGGATGCTATGTATTCCAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATTCTGTTACGGGTGCTCTTATGGATGATGCTATGATATTACCGTGTGGACATTCATTCGGTGGAGGTGGAATACAACATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACTGAGGAATCAATATCTCCAAACCTATCACTTCGGGCTGCTGTGCAGGCATATCGTCGTGAAGAGGAGTCACAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATTCATCTGTTATGGAACCATCAAGGAGTAGAGGTGTCCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTAACAACGCAATGCCTGAATGGATGGTATGTGGTGAAGACACTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCCCTTGCCAAGGTTATGGATGATCCTTCAAAACCTGCATCCAGCAAGATGCCACCTAATTGGCTTTAG 1539 0.5153 MEHAEKCTTMTTNVPSQRRRSITSKNDSSYNESPSGIWEKERKKTLPLAASVNENNTPIPSPPNRNDAVRSKHSFQTLAPMSSEDITLVPDQRIENGLNSPLVFQDDPLRFNCPAPQRRVGDPGPKTRELGAFIDDKMFIDRDHRFFAAQNPEFRRYADCSARRDPRSWSANGGAATPSEDDESDDDDEDDDDDEDDEGDTEVEGLVGDGTKSEINNNINNNNNNNGGSNLSAVANGKAHSYVSGRELLVKDGGDIGQLVHSNVSGGDEDHRQEGFGKSQNSVNVAETDCEEYYSHYLQGGEGGSGHKVMVDDSGCGFSGRKDAMYSSESGESLRAILSDSVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDSSVMEPSRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVMDDPSKPASSKMPPNWL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01548 512 MobiDBLite consensus disorder prediction 405 420 - -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 405 430 - -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 179 204 - -
Pumo10g01548 512 SUPERFAMILY RING/U-box 332 405 - -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 1 71 - -
Pumo10g01548 512 ProSiteProfiles U-box domain profile. 333 405 IPR003613 GO:0004842|GO:0016567
Pumo10g01548 512 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 81 507 - -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 259 282 - -
Pumo10g01548 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 403 IPR013083 -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 161 232 - -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 7 35 - -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 211 232 - -
Pumo10g01548 512 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01548 Pumo-Chr10 20495307 20500165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01548 279 512 Plant U-box Gene Family AT5G05230 60.744 4.02e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01548 - - gmx:100786717 725.702