Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01547 ATGCGAGCGTTATTTTCAAGCGTGAGAGTTTTTCTTTTTCTTGTGTGGTTGTTGGAGCTGGTTTGTGTGGCGGTGACGGCAGTGAACCCTTCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAAGCTGACATACGAGATCCGAAGGGGAAGCTCGAGTCTTGGAACGAGGACGATGAGAGCGCGTGTGGGGGCTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGAGTGGTGGAGGTTAACCTTGATGGGTTTTCTCTCTCTGGGAGAATAGGTAGAGGGTTGCAAAGGTTGCAGTTTCTAAGAAAGCTTTCTCTGGCGAATAATAACCTCACTGGGGGGATAAACCCCAACATTGCTCGAATAGATAACCTTAGGGTCATTGACTTGAGTGGGAATAGTCTCTCAGGGGAGGTGTCTGATGATGTTTTCCGACAATGTGGGTCTCTCAGAACTGTTTCCTTGGCCAGGAACAGGTTTTCTGGGAGCATTCCCTCTACTTTGGGGGCATGTTCTGCTCTTGCTGCTATTGACCTTTCTAATAACCAGTTTTCTGGTTCTGTCCCCTCTGGGGTTTGGTCTTTGAGTGCTCTCAGGTCTCTGGATTTGTCTGATAACTTGTTGGAGGGTGAGATTCCTAAGGGGGTTGATGCGATGAAGAATTTGAGGAGTGTTAGTGTGGTGAGGAATCGGTTGACCGGGAATGTTCCTTATGGGTTTGGGAGTTGTTTGCTTTTGAGGTCTATTGATTTGGGGGAGAATTCTTTCTCTGGGAGTATTCCTGGTGATTTTAAGGAACTCACATTGTGTGGTTACCTTAGTTTGCGGGGGAATGCTTTCTCTGGAGAGGTTCCGGAGTGGATTGGAGAGATGAGAGGGCTTGAGACGTTGGACCTTTCGAACAATGGGTTTACTGGTCAGATGCCGAGCTCTATTGGAAATCTTCAGTCGTTGAAGATGTTGAATTTTTCTGGAAATGGTTTCACTGGTAGTCTGCCAGTGTCTATGGCGAATTGCACGAAACTTTTGGTGTTGGATGTCAGTAGGAATTCAATGTCTGGATGGCTTCCGTTGTGGGTTTTCAAGTCGGATTTGGACAAGGTTTTGGTGTCAGAAAATGGACCCAGTGGTAGCAAGAAAAGCCCTTTGTTTGCCTTGGCTGAAGTCGCGGTTCAAAGCCTTCAAGTTTTGGATTTGTCACACAATGAATTTTCTGGTGAAATCACGTCTGCTGTTGGAGGTTTAAGCAGCTTGCAGGTTTTGAATGTGGCAAATAACTCTCTGAGAGGTCCTATACCAGCTGCCATTGGTGAATTGAAAACATGTTCGAGTCTTGATTTGAGCTATAATAAGCTGAATGGAAGCATACCTTGGGAAATAGGAGGAGCTGTGTCCTTAAAAGACCTGGTATTGGAAAAGAATTTCCTAATTGGGAAAATTCCAACGTCAATTGAGAACTGCTCTTTGCTAACAACTCTGATTCTGTCCCAGAACAAGCTGAGTGGTCCAATACCTGCAGCAGTTGCAAAACTTACCAACCTGCAAACTGTGGACTTATCATTTAACAATCTTAGTGGAAATCTTCCTAAGCAATTGGCCAACCTTGCCAATCTTCTTTCCTTCAATTTATCCCACAACAACCTTCAGGGTGAACTGCCGGCTGGTGGTTTTTTCAACACCATTTTACCTTCCTCTGTTTCTGGCAATCCATCTCTTTGTGGCGCTGCAGTAAACAAATCATGCCCTGCTGTGCTCCCAAAGCCTATTGTTCTAAATCCCAACACTTCTACTGACACCGGCCCGGGTTCATTACCTCCAAATTTGGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATCGGTGTTATTAGCATCACAGTTCTCAATCTCCGAGTTCGCTCCTCCACATCTCGAGATGCAGCTGCCCTCACATTTTCTGCAGGAGATGAATTCAGCCGTTCCCCAACTACAGATGCAAACTCTGGTAAGCTTGTCATGTTTTCAGGCGAACCTGATTTCAGTTCTGGTGCGCATGCTTTGCTTAATAAGGATTGTGAGCTAGGGCGTGGAGGATTTGGGGCAGTGTACCAAACAGTTCTTAGAGACGGGCATTCAGTTGCTATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAATCAGACACCAAAACCTCGTGGAACTAGAGGGTTATTATTGGACTCCATCGCTGCAGCTCCTCATATACGAGTATGTCTCCGGTGGTAGTCTGTATAAGCATCTCCATGAAGGATCTGGTGGAAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTCGGAACTGCGAAGGCCTTGGCACACTTGCACCATTCCAACATTATTCACTATAACATTAAGTCAACCAATGTCCTTCTTGATAGTTATGGTGAACCAAAGGTAGGAGATTTTGGCCTAGCAAGGCTGTTGCCAATGCTTGATCGATATGTTTTGAGCAGCAAAATTCAGAGTGCACTCGGCTACATGGCACCGGAGTTTGCCTGCAAGACGGTGAAAATCACCGAGAAATGTGATGTATATGGGTTTGGTGTCTTGGTTTTGGAGATCGTTACAGGTAAGAGGCCGGTTGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTGAGAGGGACTTTGGAAGAGGGCAGGGTGGAGGAATGCATTGATGAGAGGCTCCAAGGGAAGTTCCCAGCAGAAGAAGTTATTCCTGTGATGAAGTTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGTCCCTCTGAAGGACAAGAAGAATTGGGATGA 2934 0.4554 MRALFSSVRVFLFLVWLLELVCVAVTAVNPSLNDDVLGLIVFKADIRDPKGKLESWNEDDESACGGWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINPNIARIDNLRVIDLSGNSLSGEVSDDVFRQCGSLRTVSLARNRFSGSIPSTLGACSALAAIDLSNNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGVDAMKNLRSVSVVRNRLTGNVPYGFGSCLLLRSIDLGENSFSGSIPGDFKELTLCGYLSLRGNAFSGEVPEWIGEMRGLETLDLSNNGFTGQMPSSIGNLQSLKMLNFSGNGFTGSLPVSMANCTKLLVLDVSRNSMSGWLPLWVFKSDLDKVLVSENGPSGSKKSPLFALAEVAVQSLQVLDLSHNEFSGEITSAVGGLSSLQVLNVANNSLRGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGGAVSLKDLVLEKNFLIGKIPTSIENCSLLTTLILSQNKLSGPIPAAVAKLTNLQTVDLSFNNLSGNLPKQLANLANLLSFNLSHNNLQGELPAGGFFNTILPSSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDTGPGSLPPNLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTSRDAAALTFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGTLEEGRVEECIDERLQGKFPAEEVIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01547 977 ProSiteProfiles Protein kinase domain profile. 694 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01547 977 CDD STKc_IRAK 700 966 - -
Pumo10g01547 977 Gene3D Ribonuclease Inhibitor 92 307 IPR032675 -
Pumo10g01547 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 312 - -
Pumo10g01547 977 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 303 964 - -
Pumo10g01547 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 771 972 - -
Pumo10g01547 977 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515
Pumo10g01547 977 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515
Pumo10g01547 977 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Pumo10g01547 977 Gene3D Transferase(Phosphotransferase) domain 1 771 975 - -
Pumo10g01547 977 SUPERFAMILY L domain-like 64 312 - -
Pumo10g01547 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 313 587 - -
Pumo10g01547 977 Gene3D Ribonuclease Inhibitor 31 91 IPR032675 -
Pumo10g01547 977 Gene3D Ribonuclease Inhibitor 308 587 IPR032675 -
Pumo10g01547 977 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Pumo10g01547 977 SUPERFAMILY RNI-like 250 574 - -
Pumo10g01547 977 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Pumo10g01547 977 SMART LRR_typ_2 417 441 IPR003591 -
Pumo10g01547 977 SMART LRR_typ_2 197 221 IPR003591 -
Pumo10g01547 977 SMART LRR_typ_2 537 561 IPR003591 -
Pumo10g01547 977 SMART LRR_typ_2 124 148 IPR003591 -
Pumo10g01547 977 SMART LRR_typ_2 513 536 IPR003591 -
Pumo10g01547 977 SMART LRR_typ_2 293 317 IPR003591 -
Pumo10g01547 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 688 770 - -
Pumo10g01547 977 Pfam Protein tyrosine and serine/threonine kinase 696 962 IPR001245 GO:0004672|GO:0006468
Pumo10g01547 977 SUPERFAMILY Protein kinase-like (PK-like) 698 961 IPR011009 -
Pumo10g01547 977 Gene3D Phosphorylase Kinase; domain 1 688 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01547 Pumo-Chr10 20474909 20479587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01547 9 977 Receptor kinase-like Gene Family AT3G56370 68.821 0.0 1300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pumo10g01547 PK_Tyr_Ser-Thr 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01547 - - gmx:100791629 1780.38