Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01544 ATGGAAGAGGTAATAAATTCGATTCGACGCGCTTGTAAACTGGCCCAAAACCTTGAAGAAGACCTACCCAACTTGGCGAACCAGCCAGCTATGCTGTCCTTGTCCATTGATCGCATAACTGAGGCTTTCAGTGGTGCCAAGGAAAGGGTGTTGCTATTCTCCCGACACAACCAAACTACTTCGGAATCTCCTCCGACACAGCTGCAGCCTCAGATGGATGCTACTCTAATGCAGGAATGGCTAAGGTCTAGTCATGCACTAACAATGGATCAGTTGTTTCATCAGTTTCATCCTCCAAGGAGCACTCTCCAGATTGGTGAAATGGGAGGGAAAGATGGGGAAGATTCTGAGAAAAACAAGGGATCTGAAGGAGAGGCGCAAGGAATCCACGCATCACCCTCGCGACCACGAAGAAGCAGGGAAGCTAATCAAGAGAAGAGAAAAGAGTTGGTTCCTGCCCCACAGTTTGGAAACACAGATATGCCACCGGAGGATGGCTACACTTGGAGGAAATATGGCCAGAAAGAAATACTTGGCTCCAAGTACCCAAGGAGTTACTACAGGTGCACACACCAAAAGCTATATGAATGCCAAGCCAAGAAGCAAGTGCAAAGACTTGATCACAATCCTAACATATTTGAAGTAACATACAGAGGGAACCACACATGCCACATGTCCTTAACAGCACCATCATCAGTTCCACTACAACAACTACTAGTGGACATAGCACAAAATAATAGTAACACCATTTCCTCTCAGTTGTCTCCAACAGTGAACCTCAGCCTCCACCCTGGTGGCCGCGGCGGCACCGCCGCCAGCAGTGGCAGTGGTGGAGCCTCCACTTCAAGATTCGGTGGTGATTATCCTGTGGTGGATATGGCTGATGCCATGTTCAACTCTGGTAGCAGCAGTGGTAATAACAGCATGGAGTTTCTCTTCTCTCCCGCTGAAGGTAAAAGTGATCCAAATTGA 972 0.4805 MEEVINSIRRACKLAQNLEEDLPNLANQPAMLSLSIDRITEAFSGAKERVLLFSRHNQTTSESPPTQLQPQMDATLMQEWLRSSHALTMDQLFHQFHPPRSTLQIGEMGGKDGEDSEKNKGSEGEAQGIHASPSRPRRSREANQEKRKELVPAPQFGNTDMPPEDGYTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKQVQRLDHNPNIFEVTYRGNHTCHMSLTAPSSVPLQQLLVDIAQNNSNTISSQLSPTVNLSLHPGGRGGTAASSGSGGASTSRFGGDYPVVDMADAMFNSGSSSGNNSMEFLFSPAEGKSDPN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01544 323 MobiDBLite consensus disorder prediction 134 148 - -
Pumo10g01544 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 245 IPR044810 GO:0003700
Pumo10g01544 323 Pfam WRKY DNA -binding domain 164 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01544 323 MobiDBLite consensus disorder prediction 262 281 - -
Pumo10g01544 323 MobiDBLite consensus disorder prediction 101 168 - -
Pumo10g01544 323 Coils Coil 1 28 - -
Pumo10g01544 323 Gene3D WRKY domain 153 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo10g01544 323 ProSiteProfiles WRKY domain profile. 164 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01544 323 SMART WRKY_cls 163 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01544 323 MobiDBLite consensus disorder prediction 110 124 - -
Pumo10g01544 323 MobiDBLite consensus disorder prediction 302 323 - -
Pumo10g01544 323 SUPERFAMILY WRKY DNA-binding domain 161 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01544 Pumo-Chr10 20413011 20417451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01544 1 323 WRKY Transcription Factor Family AT2G40740 38.757 4.64e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo10g01544 WRKY 1.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01544 - - gmx:100792150 532.332