Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01543 ATGAGTATTCTTTTCCCAGCAAAGAGGAAAAGGGTCATTAGAGAACTGGTTCAGGGTCAGGACTATGCCACTCAGCTCAAGTTTCTGCTCCAGAAGCCTATTGGGCCTGATGGGTCCGTTTCAGCCAAGGAACTTGTGGCCAATGTGCTGAGATCTTTCGCTGAAACTCTCTCTGTGTTGACTTCTTCTTCTGAGGATATTGCAAGTGGTGATGACGAGGTTGCTCAGAATCTCGTGATTTCCGGAGAAGATGCCTCGCAGGTGGCAAGCATTGATCCGAGGTCCGAGGATTCAACTGAGAGTAGGAAGGGATCGCTCCGCATCACAAAGGATCGGAGAGGGTCCTATAAAAGAAGAAAGACTGAACAGACATGGACCATAGTTGCCCAAACTACTGATGATAATCATGCATGGAGAAAGTACGGACAAAAGGAAATCCTAAATTCTCAATTTCCCAGGAGTTACTTCAGGTGCACTCGGAAGTTTGAACAAGGTTGCCGAGCAACCAAACAGGTGCAACGGATACAAGAGAATCCTGATATGTACAACATTACGTACATTGGCTTTCACACATGCAAAGACACCCTCAAGGTTCCACAAATGGTCACACATTCTGAAACTTGGGACTCATTTCTTGAGAATTCCCATCCTCATGACTCAAATGTGCCAAATGAACAAGATTCCCCTATTGGATCACAAAGCCTAATTGTAAAACAAGAATATCCCAACGATGAGACTGATCCAAGTGATCTTACAGATGCTAACCTGTGGTCTGATTTGAAGGATTTTGAACTTTCCAATGACAAGCCTGGCTTGAAGATAGCATCTGAAAATGCAGACACTGTGTATTCATGCACTGGCTCTCGGAGTCTGGACATGGATTTTGGGATATTCTCTTCTCATTTTAGCACCGAGGACTTCCACTTTGATGACAGCCAATTGCTTTAG 948 0.4462 MSILFPAKRKRVIRELVQGQDYATQLKFLLQKPIGPDGSVSAKELVANVLRSFAETLSVLTSSSEDIASGDDEVAQNLVISGEDASQVASIDPRSEDSTESRKGSLRITKDRRGSYKRRKTEQTWTIVAQTTDDNHAWRKYGQKEILNSQFPRSYFRCTRKFEQGCRATKQVQRIQENPDMYNITYIGFHTCKDTLKVPQMVTHSETWDSFLENSHPHDSNVPNEQDSPIGSQSLIVKQEYPNDETDPSDLTDANLWSDLKDFELSNDKPGLKIASENADTVYSCTGSRSLDMDFGIFSSHFSTEDFHFDDSQLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01543 315 Gene3D WRKY domain 117 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo10g01543 315 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01543 315 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01543 315 MobiDBLite consensus disorder prediction 86 119 - -
Pumo10g01543 315 MobiDBLite consensus disorder prediction 95 119 - -
Pumo10g01543 315 ProSiteProfiles WRKY domain profile. 133 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo10g01543 315 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 215 IPR044810 GO:0003700
Pumo10g01543 315 SUPERFAMILY WRKY DNA-binding domain 129 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01543 Pumo-Chr10 20392499 20395262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01543 7 229 WRKY Transcription Factor Family AT3G56400 43.421 7.72e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo10g01543 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01543 - - gmx:100170683 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01482 9 42495447 42499848 Pumo10g01543 10 20392499 20395262 PCT