Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01542 ATGAAAGCAGTGACCAGTACTGTTTTCCTTTCCAATTTTGGGGTAACTCCTTGCATGGCACACACAGGATGGAGAAGGAGTTGGTGGAAGTTGTACGAGGCCGCGAAGAAGGCGGCGGATGCGGCCATCTCCGGCGACGCCGAACACGAGGAAACCCGATGCATCGATGTGCTCGAGCAGCTTAAGAAGTTTCCCGTTAATTATAAGATTCTCGTTAACACCCAGGTGGGCAAACATCTTAAAGTTCTGACAAAGCACCCAAGGCAGAAAATTAAGGCCTTTGCTATTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAAAATGGGGGCTCTGATAGTAAGGTTGAGTCGGCTAATGGGGAGAGATCTAAAGCTGGGAAAATGCAAAAGAGTCCTTCGGTGAAGGTTGAAAAAGGTGAAACTGTCAAGGTTGAGAAAGTTGATAGGAATGGTTCATCAAAGTCAAGCTCAGAAAATATGAAAAAGGTACAAAATGATGTCAACAGGGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGATAGCCAAGGAGGAAAAGCCAGTTTCTGGATCAAAGAAAATGTCATCCAGTTCTGCCGCTCCCCCAAAGCTAAAAACTATGATTAAATCTAATGATGCAACACGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTATCCAAGGTCGCTGGAGAGGCTGATGAAGATCTTGTTGATATAGTCAATGCTTCTGATCCCATCCGTGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCAAATGGGGCGCAAAAGGTCAAGTATAGGTCCTTAATGTTTAACCTTAAGGATTCAAATAACCCCGATTTCCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCAGAGCAACTTATCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAGAATCAGAAAATCACAGAGAAAGCACTGTTTGAATGTGAGCGTGGAGTTCAACCAAAAGCTACAACAGATCAATTTAAGTGTGGCCGATGTGGTCAAAGAAAGACCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTTGTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1176 0.4354 MKAVTSTVFLSNFGVTPCMAHTGWRRSWWKLYEAAKKAADAAISGDAEHEETRCIDVLEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQKIKAFAIDLIEIWKGIIIKETSKNKNGGSDSKVESANGERSKAGKMQKSPSVKVEKGETVKVEKVDRNGSSKSSSENMKKVQNDVNREKTDRAASVKVEKIAKEEKPVSGSKKMSSSSAAPPKLKTMIKSNDATRDKIRELLHEALSKVAGEADEDLVDIVNASDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSTAEMASEQRKQENQKITEKALFECERGVQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCCVCNNRWKFC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01542 391 PIRSF TFIIS 28 391 IPR035100 -
Pumo10g01542 391 MobiDBLite consensus disorder prediction 138 159 - -
Pumo10g01542 391 SMART Cys4_2 351 390 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pumo10g01542 391 FunFam Probable Transcription elongation factor S-II 320 391 - -
Pumo10g01542 391 ProSitePatterns Zinc finger TFIIS-type signature. 353 388 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pumo10g01542 391 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 37 391 - -
Pumo10g01542 391 CDD Zn-ribbon_TFIIS 344 390 - -
Pumo10g01542 391 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 29 121 IPR035441 -
Pumo10g01542 391 MobiDBLite consensus disorder prediction 192 211 - -
Pumo10g01542 391 Gene3D - 320 391 - -
Pumo10g01542 391 Pfam TFIIS helical bundle-like domain 57 106 IPR017923 -
Pumo10g01542 391 NCBIfam transcription elongation factor S-II 35 391 IPR006289 GO:0003676|GO:0005634|GO:0006368
Pumo10g01542 391 CDD TFIIS_I 46 106 - -
Pumo10g01542 391 ProSiteProfiles Zinc finger TFIIS-type profile. 349 389 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pumo10g01542 391 ProSiteProfiles TFIIS central domain profile. 223 346 IPR003618 GO:0006351
Pumo10g01542 391 SUPERFAMILY Elongation factor TFIIS domain 2 210 321 IPR036575 GO:0006351
Pumo10g01542 391 SUPERFAMILY Zinc beta-ribbon 332 389 - -
Pumo10g01542 391 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 47 121 IPR035441 -
Pumo10g01542 391 Gene3D - 198 319 IPR036575 GO:0006351
Pumo10g01542 391 Pfam Transcription factor S-II (TFIIS) 351 389 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pumo10g01542 391 SMART TFS2_5 31 108 IPR003617 GO:0005634
Pumo10g01542 391 ProSiteProfiles TFIIS N-terminal domain profile. 33 109 IPR017923 -
Pumo10g01542 391 Pfam Transcription factor S-II (TFIIS), central domain 220 337 IPR003618 GO:0006351
Pumo10g01542 391 SMART mid_6 221 329 IPR003618 GO:0006351
Pumo10g01542 391 MobiDBLite consensus disorder prediction 112 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01542 Pumo-Chr10 20357368 20362830 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pumo10g01542 TFIIS_M 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01542 K03145 - gmx:100811982 641.343