Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01534 ATGAAATTGGTTCAGTTTTTATGTGCCATATTCATCATGATGGTAATGATGGTGTATGTTTTAGGGCCTGCAAGGTGTTATAGGCAGATCAAAAACAAGCCATACCCCAAATCACGCTTCTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTTAGCTGGGAAAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGAATTGCATGCAACAAATATATGGCGAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGTAACAGTCATCATGCACAGGAGGCCCTTCGTCGTGCTAAATTCAAGTTCCCTGGTCGTCAGAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTGCTGATTATCTCAAGTTCAAGTCAGAGAACAGGATTGTGCCTGATGGTGTGAATGCAAAGCTCCTTGGGTGTCATGGACCACTGGCAAATCGTGAACCTGGACAGGCTTTTTTGTCTAGTGCTACCGCTTAG 720 0.4403 MKLVQFLCAIFIMMVMMVYVLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENRIVPDGVNAKLLGCHGPLANREPGQAFLSSATA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01534 239 CDD Ribosomal_L16_L10e 59 184 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo10g01534 239 SUPERFAMILY Ribosomal protein L16p/L10e 23 191 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo10g01534 239 Pfam Ribosomal protein L16p/L10e 30 184 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo10g01534 239 Gene3D Ribosomal protein L10e/L16 20 236 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo10g01534 239 FunFam 60S ribosomal protein L10 20 224 - -
Pumo10g01534 239 NCBIfam 50S ribosomal protein L16 22 192 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pumo10g01534 239 ProSitePatterns Ribosomal protein L10e signature. 126 147 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pumo10g01534 239 PANTHER 60S RIBOSOMAL PROTEIN L10 23 231 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01534 Pumo-Chr10 20298758 20301160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01534 23 238 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.574 2.68e-142 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01496 9 42642751 42644666 Pumo10g01534 10 20298758 20301160 PCT