Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01532 ATGGAATCGTCAGCGTCGTCGTCGTCGCTGTCGTCGTCGTCTTCTGGAAGCGACACCAGCGGTGGTGGTGGCACTGTCACGTGGTTCGGGATGAGTTTTCCGTTCCGTTCTCCGCTCTCTCTCGTGATGGATTACTGCGCGCGCGAGGATTCCGCGGAGCCTGTGATTATTATTCCCCGCACGCGCCCTCGGTTTCAGGCGCAGGCCGAATCCGCCTCTGCTTCGGCCTCTGATTCCGATGAGAATGTGTGCAACGGCGCTGAGGAGGTTGCGATACGCATAATCGGGGCCGGCGAGCAGGAGAGCGGTTCGTCGCCATCGTCGTCGTCGTCGAGGGGCCGGGGTGGGGAGCCGGGCTGTGAGGAGGCTGTGGTTGGGAGGAGCGGGATGCTGTCGTCGGAGGCTCGCCGGCGAATGGCGGAGGAGAGGGTGCCGCTGGTGTCTTTGGATGATGGTATTGGTGGCGGTAGGGATTCTTCTTCTTCATCATCGTCCTCTACATACCAGAGGTATGATATTCAGCAGGTTGCCAAGTGGATTGAGCAGATTCTACCGTTTTCTCTCTTGTTGCTAATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCCTTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTCGGTATCTCTTTTGCCTTTATGCTGCATGTGATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAAGCAACACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGATACATTGATGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTTGAGTATTCTCTGCTGCTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCCTCACTGACCACAGGATTGTATCTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAATGCTTCGTTTCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACGGAACAGGTGAATGCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGGACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTCTGTTTTTTCAGTTGTTTTAA 1389 0.4896 MESSASSSSLSSSSSGSDTSGGGGTVTWFGMSFPFRSPLSLVMDYCAREDSAEPVIIIPRTRPRFQAQAESASASASDSDENVCNGAEEVAIRIIGAGEQESGSSPSSSSSRGRGGEPGCEEAVVGRSGMLSSEARRRMAEERVPLVSLDDGIGGGRDSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVICIYWWYRNDDLLYPLAMLPPKATPPFWHTIFIILVNDTLMRQAAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYSLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01532 462 MobiDBLite consensus disorder prediction 1 26 - -
Pumo10g01532 462 CDD RING-HC_RNFT1-like 399 439 - -
Pumo10g01532 462 ProSiteProfiles Zinc finger RING-type profile. 401 439 IPR001841 -
Pumo10g01532 462 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 67 462 IPR044235 GO:0061630|GO:1904294
Pumo10g01532 462 MobiDBLite consensus disorder prediction 1 27 - -
Pumo10g01532 462 Pfam Zinc finger, C3HC4 type (RING finger) 399 442 - -
Pumo10g01532 462 ProSitePatterns Zinc finger RING-type signature. 416 425 IPR017907 -
Pumo10g01532 462 SMART ring_2 401 438 IPR001841 -
Pumo10g01532 462 MobiDBLite consensus disorder prediction 96 133 - -
Pumo10g01532 462 SUPERFAMILY RING/U-box 392 444 - -
Pumo10g01532 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 449 IPR013083 -
Pumo10g01532 462 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01532 Pumo-Chr10 20281862 20290291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01532 36 462 C3H Transcription Factor Family AT5G01960 64.169 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01532 - K22379 gmx:100784614 794.267