Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01529 ATGGAGGCACTGTTGTGCAGAAAACTGGGTGATCCAACGGTATCTTTGGAAGACAACGATAGCCCAATAGTTTTGTCAAAGAATCACCCAATTCCCCAACTCGATTCTCCCACTGCCGTAAGAGTCAGAATCAAAGCCACAAGCTTGAACTTCGCCAACTACTTGCAGATATTGGGCAAGTACCAAGAGAAACCCCCTTTGCCCTTCATCCCGGGCTCTGACTTTTCCGGCTTCGTCGACGCCGTCGGCCCCAAAGTTTCCAGCTTCAAAGTCGGAGACCCCGTTTGCTCCTTCGCTGGCCTCGGCTCCTTCGCTCAGTTCATCGTCGTTGACGAGTCCCAATTGTTTCGAGTGCCCCAAGGTTGTGATCTTGTTGCTGCTGGGGCACTTGTTGTGGCGTCTGGCACTTCTCATGTGGCACTTGTCCATAGAGCCCAATTGAGCTCCGGTCAGGTGTTGTTGGTTTTGGGTGCAGCTGGAGGTGTGGGACTTGCTGCTGTGCAAATTGGAAAAGCTTGTGGGGCCATAGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGCTCTTGAAATCTCTTGGTGTTGATCATGTGGTGGACTTGGGTAATGAAAATGTTACTCAGAGTATCAAACAGTTCCTTCAGGCTAGAAGGCTTAAGGGGATTGATGTCCTGTATGACCCGGTTGGAGGCAAGCTCACTAAAGAATCTTTGCGGCTTCTGAAATGGGGAGCTCACATTCTCATAATTGGGTTTGCGAGTGGAGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTGCATGGCCTTTACTGGGGTAGCTATAAAATACACAGCCCAGCTGTTCTTGAAGATTCTATCAAGGAGCTACTGTCTTGGTTGACAAGAGGCTTGATTTCCATCCATATTTCTCATTCTTACCCCCTCTCAGAGGCCAACCTCGCCTTTTCTGCCATCAAAGATAGGAAAGTTATTGGGAAGGTGATGATTGTTTTTGATGAGAAACCTACAAGATCTAAGCTGTGA 1041 0.4832 MEALLCRKLGDPTVSLEDNDSPIVLSKNHPIPQLDSPTAVRVRIKATSLNFANYLQILGKYQEKPPLPFIPGSDFSGFVDAVGPKVSSFKVGDPVCSFAGLGSFAQFIVVDESQLFRVPQGCDLVAAGALVVASGTSHVALVHRAQLSSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQLLKSLGVDHVVDLGNENVTQSIKQFLQARRLKGIDVLYDPVGGKLTKESLRLLKWGAHILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHSPAVLEDSIKELLSWLTRGLISIHISHSYPLSEANLAFSAIKDRKVIGKVMIVFDEKPTRSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01529 346 SMART PKS_ER_names_mod 17 335 IPR020843 GO:0016491
Pumo10g01529 346 SUPERFAMILY GroES-like 29 148 IPR011032 -
Pumo10g01529 346 Pfam Zinc-binding dehydrogenase 161 299 IPR013149 -
Pumo10g01529 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Pumo10g01529 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 287 IPR036291 -
Pumo10g01529 346 Gene3D - 133 280 - -
Pumo10g01529 346 Gene3D - 34 331 - -
Pumo10g01529 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Pumo10g01529 346 CDD QOR1 1 335 - -
Pumo10g01529 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01529 Pumo-Chr10 20167489 20171932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01529 68 266 Monolignol Biosynthesis Gene Families AT1G72680 26.695 6.32e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01529 K00344 - gmx:100815246 622.468