Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01518 ATGGAGACTCTGAAAGCTGCGATTCCAGAAGGCTTGAAGCGAGCGATAGGGGATAGCAATGTCGATGACCTTCGCAGCACATGCTCTTCTCTTCACCGCTTCTTCCTCCACTTCCACCCATTTCACCAGATGATCACTGAACTGGCTGATCCAAAGTATGCTCTGTGCGGTAAGAGTAACGACGCTGCGTTGAAGTCCAAGCAGCTTGGCAATCTATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTACACTCAGGCACTGCGCGAGGCTCCATTAGACTCCGGTGATATGGAGAGTAATCTTGTTGCAACATTATATATCAATCGTGCTACTGTATTGCATAAAATGAGTCTTTTAGTAGAATGCTTACGAGATTGCACTCGAGCTCTTCAAATTTGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGAAAGGCAAATGCTTCATTTGGAAATTATAAAAATGCAATTTGTGACCTAAATGTGGCTAAGAGTGTGGAACCTTCAATGGGTGGGAAGAGACAAATAGAAGGTGAACTGAAAATTCTTTTAGACCAATGTAAAAGCACGAGTGCGGTAGTACAAATACAACATAAGGAGAACAACTGCAATACTGTGGGTGAGATGCCCCACATAAAGCTACAGTGTGTCTCCACACCTGATAAAGGAAGAGGCATGGTGTCATCAAGTGTCATTTTACCAGGTTCTTTGGTTCATGCTGAAGAACCTTATGCTATGATAATATTAAAACAATGTCGGGAAACCCATTGCCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGGGCAACTGGGCAAATGTTCAAGATTCACCCAGAATATAATGGCTTTTTTAAAAACTTACCCAGTGATCTTGGAAAATATGCTGCTGAAGTTATTCAATGCAATGATTCTGAACAGGAAATTGAGGATATTACTGAACATCAACATGAATGTCAAGGTGTACATTGGCCTGTGGTACTTCCATCTGAGATAGTTTTGGCTGGTCGAATACTAGCAAGATTTTTGCTAAATAGCACATCTGAAGACATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACAAATGCCGTCTGAAAGCAAATTGGATTCACATATATATGCCATTGTATTATTATATTGTCTTCAACACTCTTGTGGAACTATGTTTTCCATAGATGAAGTCTCTATATCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAGTCAATAGACGCCCATGGACTATCAGGTCATTTTGGAGAATTTCCATTTCAATCTGGTGCACATTCAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAGCCAAATGTTCATTCATATTTTCTTTCACGTACTCTTTATGTACGAACCACAAATGTTGTAGCAGCTGGGTGTCAGCTAGAATTTCCTGTTTTGCAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAATTTTCTGAAAGATGAGTATGCATTTCATTGTCAGTGTACTGGTTGTTCAGAAGTTAATCTATCAGACATTGTCCTCAATGCCTTCCATTGTATCAATCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGACTGTGAAAAGCAGAAAATCAAGCACTTCCCTATTTCTGACCATGTTGACAAGAATGATGACATTTATGAAGTATGTCTTCGTGTCTTCAAACAAAATGGTGCCTCTATTCATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACATGATGCAGTCGGTAAAGCTTTAATATCCATAAAAAGGTTGCAGGATGCAATACTGTCACAACAAATTTCAAGTGTTACTATTTCTGATGCTTTGAGATCTCTTCGATTGCTAAGATTAAATTTGCATTCATACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCCCAGGTTTTTTGTTTAGTGGGAGAATTACAATTATCTTTCGATCATTGTAAAGCATCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCTTATGAACTTGTGAAGTTTTCTTCCATCCAACTTTCCTTGGATGATGGTACTGCTGTGGAAAGCATAAGTCGAATAGATGATATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTCCCTTATCTTCAATACCTTAGGAGAGAAATTGAGAAATTTTCATTGAAGGCTCTCCAAATATAA 2364 0.3913 METLKAAIPEGLKRAIGDSNVDDLRSTCSSLHRFFLHFHPFHQMITELADPKYALCGKSNDAALKSKQLGNLCFSNADYAKALDCYTQALREAPLDSGDMESNLVATLYINRATVLHKMSLLVECLRDCTRALQICPSYAKAWYRRGKANASFGNYKNAICDLNVAKSVEPSMGGKRQIEGELKILLDQCKSTSAVVQIQHKENNCNTVGEMPHIKLQCVSTPDKGRGMVSSSVILPGSLVHAEEPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRATGQMFKIHPEYNGFFKNLPSDLGKYAAEVIQCNDSEQEIEDITEHQHECQGVHWPVVLPSEIVLAGRILARFLLNSTSEDIINFVERLELSHCYKQMPSESKLDSHIYAIVLLYCLQHSCGTMFSIDEVSISQVVIIISQIKVNCMTVVRLKSIDAHGLSGHFGEFPFQSGAHSTSNVEQVRVGKAIYKAGSLFNHSCQPNVHSYFLSRTLYVRTTNVVAAGCQLEFPVLQVGLWDCKDRLNFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCINPNCSGAVLESRVLDCEKQKIKHFPISDHVDKNDDIYEVCLRVFKQNGASIHIQPGYCLKCGSYCDLESSHDAVGKALISIKRLQDAILSQQISSVTISDALRSLRLLRLNLHSYNKLIAEAEDSIAQVFCLVGELQLSFDHCKASIQILEKLYDTDDIVIAYELVKFSSIQLSLDDGTAVESISRIDDIFSRYYGLHADLVFPYLQYLRREIEKFSLKALQI 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01518 787 Gene3D Tetratricopeptide repeat domain 39 199 IPR011990 GO:0005515
Pumo10g01518 787 SMART tpr_5 63 96 IPR019734 GO:0005515
Pumo10g01518 787 SMART tpr_5 140 173 IPR019734 GO:0005515
Pumo10g01518 787 SMART tpr_5 684 717 IPR019734 GO:0005515
Pumo10g01518 787 SMART tpr_5 106 139 IPR019734 GO:0005515
Pumo10g01518 787 Gene3D SET domain 413 518 IPR046341 -
Pumo10g01518 787 Gene3D Tetratricopeptide repeat domain 525 779 IPR011990 GO:0005515
Pumo10g01518 787 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Pumo10g01518 787 SUPERFAMILY TPR-like 61 191 IPR011990 GO:0005515
Pumo10g01518 787 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 779 - -
Pumo10g01518 787 Coils Coil 669 689 - -
Pumo10g01518 787 SUPERFAMILY SET domain 218 545 IPR046341 -
Pumo10g01518 787 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo10g01518 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01518 K24634 - gmx:100783548 1434.47