Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01516 ATGTTTCAAACAGTGAGTTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGGGCTGTTGTGGTCAGAGCCGGAAGAGCAACAGGAGGAGACATACTAGCTGCAGTGATGAGTATTCTCTTTGGTGCCATATCTCTCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATACGAAGTTTTTCAAGTGATCCAAAGAAAGCCTCTAATAAGTAATAATGAATCAGAAGGGAAGATGCCTAGCAAAATCAAAGGTGACATTGAATTACGAGATGTTCACTTTTGCTACCCATCACGGCCAGAGAAAGCAATCCTTCAAGGACTGTTCTTGTCAATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTGGTTAGCAGATTTTATGATCCCTCAAGAGGAGAAATTTTTATTGATCATCACAATATCAAGGATCTCAATCTGAAGTTCCTGCGAAGAAATATAGGGGCTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGAAAAATGGACGCAGATGATCAAGAGATTCAGAAGGCAGCAGTAATGTCAAATGCACACTCTTTCATATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGAGAAAGGGGTGTCCAATTATCAGGAGGCCAAAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTCGATTCAGAGTCTGAAAAACTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTAGAGAATGGACAAGTTGCAGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAGATTCTATAGTACATTATTCAGCATGCAGAACCTTGAACCAGTCCCTGAATCCAGAGCTATAATTTCCAAGAATAGAAGTGCCCGCCAAGAAGATTTTCCTGATGAAACTAGACCACTAGTAGAGGTGCAGGGAGAGGTCCAAATAAATATCACTGAGCATTCTGTGCTAAAGGAACAGAACAAAATGAGCAGAACAGAAAGAAATAAATTTTTCAGAATTTGGTTTGGTTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATTGGCTCATTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTTCTACATCATCACCATTGGAGTAGCATACTTTGATGAAGATGCAAAACGAAAAGTTGGATTTTATTCAGCCATATTCACTGCAATAGGGTTGCTTTCATTATTCAGCCACACCTTCCAGCATTACTTCTTTGGAGTTGTTGGAGAAAAGGCCATGGCAAATCTAAGACGTGCTCTGTATTCAGGTGTGCTACGTAATGAAGTAGGCTGGTTTGACAAATCAGATAATACTGTTGGTTCATTGACTTCACGCATTATCAGTGACACTGCCATGGTCAAAGTCATCATTGCTGATCGAATGTCTGTAATTCTGCAATGTGTTTCCTCCATTCTGATAGCAACAGTTGTCAGCATGGTTGTCAACTGGAGAATGGCTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCTGAGTCCACAACCAACATAAGAACTATTGCATCATTTTGTCATGAAGAACAAGTACTGAGGAAAGCCAAAACATCCCTGGAAATTCCAAAGAAAAAGTATAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCGTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAGCAATTCTGGTTGACAGACGGCAAGCCACCTTTAAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCATCTCTGCTATCAATATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGACACACCAGATGATTCCCAACCTGAGAGGATCCAAGGAAATGTAGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGGCCCACAGTCACTGTTCTTGACAATTTTAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGCGGAGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTGAGATTTTATGATCCACAGGCAGGAAAGGTATTAATTGATGGGAAAGACATACAGAAATATAATCTAAGATGGTTTAGGACACAAATAGGACTGGTACAACAAGAGCCACTGCTTTTTAATTGCTCGATTAGAGACAATATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAAAGAAGCAAACATACATGAATTTGCAAGTAATCTACCAAATGGATATAACACTGTTGTTGGAGAGAAAGGCTGCCAGCTTTCTGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACATTACTAAAGAAGCCTGCAATATTACTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAAATATTGTGAATGCTTTAAAAACAATACATCTGAAGGAAGACAGTGGTTTGTGTTCAAGAACCACCCAGATCACAGTAGCTCATAGGCTTTCCACAGTAATAAACTCAGATACTACAATTGTCATGGATAAAGGTAAAGTTGTAGAGATGGGTTCCCACTCAACCCTAATAGCAGCAGAGGCAGGACTTTATTCAAGGTTATTCAGGTTACAGAGCTTTGAAGAAACTTCATAG 2934 0.4107 MFQTVSFCSWALIVWVGAVVVRAGRATGGDILAAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNNESEGKMPSKIKGDIELRDVHFCYPSRPEKAILQGLFLSIPAGKTVALVGSSGCGKSTVISLVSRFYDPSRGEIFIDHHNIKDLNLKFLRRNIGAVSQEPSLFAGTIKDNLKVGKMDADDQEIQKAAVMSNAHSFISQLPNQYLTEVGERGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVAETGTHQSLLDTSRFYSTLFSMQNLEPVPESRAIISKNRSARQEDFPDETRPLVEVQGEVQINITEHSVLKEQNKMSRTERNKFFRIWFGLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFDEDAKRKVGFYSAIFTAIGLLSLFSHTFQHYFFGVVGEKAMANLRRALYSGVLRNEVGWFDKSDNTVGSLTSRIISDTAMVKVIIADRMSVILQCVSSILIATVVSMVVNWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESTTNIRTIASFCHEEQVLRKAKTSLEIPKKKYRKESIKYGIIQGVSLCLWNIAHAVALWYTAILVDRRQATFKNGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDTPDDSQPERIQGNVEFENVKFNYPSRPTVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQAGKVLIDGKDIQKYNLRWFRTQIGLVQQEPLLFNCSIRDNICYGNNGASESEIVEVAKEANIHEFASNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERNIVNALKTIHLKEDSGLCSRTTQITVAHRLSTVINSDTTIVMDKGKVVEMGSHSTLIAAEAGLYSRLFRLQSFEETS 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01516 977 Gene3D - 715 976 IPR027417 -
Pumo10g01516 977 SUPERFAMILY ABC transporter transmembrane region 390 711 IPR036640 GO:0005524|GO:0016020
Pumo10g01516 977 Pfam ABC transporter 743 892 IPR003439 GO:0005524
Pumo10g01516 977 Pfam ABC transporter 111 259 IPR003439 GO:0005524
Pumo10g01516 977 CDD ABC_MTABC3_MDL1_MDL2 725 971 - -
Pumo10g01516 977 CDD ABC_6TM_Pgp_ABCB1_D2_like 395 708 - -
Pumo10g01516 977 Pfam ABC transporter transmembrane region 407 669 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo10g01516 977 FunFam ABC transporter B family member 4 82 336 - -
Pumo10g01516 977 SUPERFAMILY ABC transporter transmembrane region 2 73 IPR036640 GO:0005524|GO:0016020
Pumo10g01516 977 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 406 690 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo10g01516 977 SMART AAA_5 119 311 IPR003593 GO:0016887
Pumo10g01516 977 SMART AAA_5 752 946 IPR003593 GO:0016887
Pumo10g01516 977 Gene3D - 90 351 IPR027417 -
Pumo10g01516 977 FunFam ABC transporter B family member 1 715 972 - -
Pumo10g01516 977 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524|GO:0016887
Pumo10g01516 977 ProSitePatterns ABC transporters family signature. 864 878 IPR017871 GO:0005524|GO:0016887
Pumo10g01516 977 PANTHER ABC TRANSPORTER B FAMILY 377 970 IPR039421 -
Pumo10g01516 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 971 IPR027417 -
Pumo10g01516 977 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 57 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo10g01516 977 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 328 IPR003439 GO:0005524
Pumo10g01516 977 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 725 969 IPR003439 GO:0005524
Pumo10g01516 977 Gene3D ABC transporter type 1, transmembrane domain 2 691 IPR036640 GO:0005524|GO:0016020
Pumo10g01516 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 329 IPR027417 -
Pumo10g01516 977 CDD ABC_MTABC3_MDL1_MDL2 92 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01516 Pumo-Chr10 20070614 20076074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01516 5 976 Calmodulin-binding Proteins AT2G36910 42.772 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01516 K05658 - zju:107414909 1434.47