Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01484 ATGGGGGAGGTGGTGATGAGTGGAGAGAAGTCAGTGAGAGTGGAGGGGGTGGAGAAGGAGGAGAGTGGAAGTGGGAGCAAGGGTGGTGAATTGAACGGGTTGATGAGGTGGGAGAAGTTCATGCCAAGGATGATTTTGAGGGTGCTGTTGGTTGAATCAGATGATTCCACAAGACAGATTATTGCAGCGCTTCTCAGAAAATGCAGCTACAAAGTGGTTGCTGTTCCTGATGGCTTGAAGGCGTGGGAATTACTCAAGGGAAGACCGCACAATGTTGATCTAATACTGACAGAAGTGGATTTGCCGTCCATATCTGGCTATGCACTTCTCACATTAATTATGGAGCATGAGATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGCTGAGAGGTGCTGCCGATTATCTTGTTAAGCCTATTAGAAAAAATGAGTTGAGGAATTTGTGGCAACATGTTTGGAGAAGACAATCGTCAACCACTGGCATTAATGGTGGCCACCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCATTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCTGACTTGGAAGCTGAGAGTGGCCCTGTCGATAACATGCAGGAATTTTCTCCGCTGAAATGTGGGGAAACATGTCCAAGTGGAACAGATACACAACAGGTTGAAACAAGCATTCGTTTAGGCCAGACATTGATGATGCATGACAGTCATGCTGGAGGATTAAATGTGAGTATCCGCAAAAATGGTGAGGCAAGCACAACTAATGACAAGGATGCTGATCCAGAGCATTTTGGGAATAGCATCAGTGGTGAGGCTCATGAGAATCACTATGTGCAAATTAACTCTTCCAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATCCAAACTGCACCATAAAAAATTCCACAGTTAATTGCACAGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCGGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAATCTCGACGCCTGCAGTGTTAATTAACTTCTCGGATCAACAAAGAGAACAGATAAATTGTGCGAAAAACATCTCACACATCGCTACTGGCTGCAACTCAGATAGTGCAACACCTAGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAATTTGAACTTGCAACCTCACACTCCCAGCAAGGGCATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATGGTTCTGTACTTCCTTCAGTGTTTCGTACACAGTCAGGTGCACCAGCAGTGCCTAGTCCAAATTCAGTTGTGCTCCTTGAACCAAACTTTCAAGTAAATGCATTTTATCAGTCAAATATGAAAGATAGTAGTTCAGAGCAGCTTTATGAACCTCGTGGTCCAAATGGAAACAGCACCCAAAACCACATTGTGTACACACAGGAGCACAAATCAGAACATGCAGAAGATCGAGGACATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAATTTAACACTGTCAGGGCAGCTTCAGAGGGCAAGCATGAAGACCTCACAAACAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAACAGCGTCCTAGAGTGAAAGGACAATTTGTTCGTCAAGTACATCCTGATCCTCTTGTTGCAGTAAGAGATGGCGAAGAATATGACCATTCACAGATTTCTGACTCACCTGGAGAGGAGAGCATGAATTCTTAG 2100 0.4329 MGEVVMSGEKSVRVEGVEKEESGSGSKGGELNGLMRWEKFMPRMILRVLLVESDDSTRQIIAALLRKCSYKVVAVPDGLKAWELLKGRPHNVDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGGHQDESVAQQKVEATAENNAASNHSSGDAACIQRNMELIEKGSDAQSSCTKPDLEAESGPVDNMQEFSPLKCGETCPSGTDTQQVETSIRLGQTLMMHDSHAGGLNVSIRKNGEASTTNDKDADPEHFGNSISGEAHENHYVQINSSKEAIDLIGAFHTHPNCTIKNSTVNCTGKFDLSPQLDLSLRRSRPGSFENELTEERHTLMHSNASAFKRYTNRQLQISTPAVLINFSDQQREQINCAKNISHIATGCNSDSATPSMQRCIVSPTTVQSKEFELATSHSQQGHSLPIPVKGVRFNDLCTAYGSVLPSVFRTQSGAPAVPSPNSVVLLEPNFQVNAFYQSNMKDSSSEQLYEPRGPNGNSTQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQFNTVRAASEGKHEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAVRDGEEYDHSQISDSPGEESMNS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01484 699 SUPERFAMILY CheY-like 46 171 IPR011006 -
Pumo10g01484 699 MobiDBLite consensus disorder prediction 551 572 - -
Pumo10g01484 699 ProSiteProfiles Response regulatory domain profile. 47 165 IPR001789 GO:0000160
Pumo10g01484 699 Gene3D - 44 234 - -
Pumo10g01484 699 MobiDBLite consensus disorder prediction 675 699 - -
Pumo10g01484 699 MobiDBLite consensus disorder prediction 675 689 - -
Pumo10g01484 699 MobiDBLite consensus disorder prediction 291 309 - -
Pumo10g01484 699 SMART REC_2 46 161 IPR001789 GO:0000160
Pumo10g01484 699 Pfam Response regulator receiver domain 48 159 IPR001789 GO:0000160
Pumo10g01484 699 MobiDBLite consensus disorder prediction 218 238 - -
Pumo10g01484 699 MobiDBLite consensus disorder prediction 288 312 - -
Pumo10g01484 699 CDD psREC_PRR 48 151 - -
Pumo10g01484 699 ProSiteProfiles CCT domain profile. 626 668 IPR010402 GO:0005515
Pumo10g01484 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 47 211 IPR045279 GO:0009736
Pumo10g01484 699 MobiDBLite consensus disorder prediction 1 30 - -
Pumo10g01484 699 Pfam CCT motif 626 668 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01484 Pumo-Chr10 19714411 19719586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01484 621 670 Response Regulator Gene Family AT5G24470 84.000 7.82e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pumo10g01484 Response_reg 3.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01484 K12130 - gmx:100777119 1214.52