Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01477 ATGGATTCAAAGCAGTGTAACCCGTCCAACTCCGGCGCAAATCTGGGCCTCAAACGGGGCGGGTTTTGCTTGGGTCCAGCGGGTGGTGATGGATTCGGATCTTTTCTGGTGGTTTTGGACTCGGCGGAGGAAGAAGTGGCTTCCGAGTTGGGCTTCGAATTCACTCCTTTTACTGGGCCCGTGCCCAAGGAAAACCTCCACTTCTGGCCTTGTGCGATCTCGAAGTGGCTGAAGATGGACATCATCGTGTTGTTGTGTTGTGCGGATTTTAAAAAACTGGTTAAGGAGGTGGTTGATTTGTCTGCTCAGTCTCGTCTCTCTTCTACTCCGACGCAAGCAGAAGCAGCTTCTGTTGGTGTAATCTCTGCGTGGGCTGCAATGGATTCCGGCGTCCAGGGTTGCATCCTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACTGCTGAGAAGATCAACGCTCTCCTGAAGGCCTCCAATGTCTCCGCGGAGTCCTATTGGCCCAGCCTCTTCGCAAAGCTCGCCCAGAATAAGAACATCGAAGACCTCATCTTGAACGCCGGTTGTGGTGGTGGTGCCGCCGTTGCCGTTTCCGCTCCCGCCGCCGGTGGTGGTGGAGGTGCCGCAGCAGCCGCACCCGCCGCTGAGGAAAAGAAGGAAGAAGTGAAGGAAGAAAGTGATGACGACATGGGTTTCGGCTTGTTTGATTAG 714 0.5448 MDSKQCNPSNSGANLGLKRGGFCLGPAGGDGFGSFLVVLDSAEEEVASELGFEFTPFTGPVPKENLHFWPCAISKWLKMDIIVLLCCADFKKLVKEVVDLSAQSRLSSTPTQAEAASVGVISAWAAMDSGVQGCILATLILHDEEIPVTAEKINALLKASNVSAESYWPSLFAKLAQNKNIEDLILNAGCGGGAAVAVSAPAAGGGGGAAAAAPAAEEKKEEVKEESDDDMGFGLFD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01477 237 Pfam 60s Acidic ribosomal protein 148 236 - -
Pumo10g01477 237 Hamap 50S ribosomal protein L12 [rpl12]. 132 237 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pumo10g01477 237 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 127 237 - -
Pumo10g01477 237 Gene3D - 131 189 IPR038716 -
Pumo10g01477 237 MobiDBLite consensus disorder prediction 203 237 - -
Pumo10g01477 237 FunFam 60S acidic ribosomal protein P1 125 189 - -
Pumo10g01477 237 CDD Ribosomal_P1 132 236 - -
Pumo10g01477 237 MobiDBLite consensus disorder prediction 215 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01477 Pumo-Chr10 19657985 19664270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01477 127 237 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 50.000 1.13e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01477 K02942 - gmx:100801741 145.591