Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01474 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCTTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGATTCCTCCTCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCTCATGGCGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGGGGCCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCCGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCTAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGCAGAAGCAGAAGTCCAAAAAGGGTTAGAAGTCGATCTTTGGAGCGATCTGTGTCTAGGTCACGATCTAGATCTCGATCCGCATCACCAATCAAATCTTCCAGGCCAAGATCTCGTTCACGATCTGGATCTCCTCGCCAGGTGCTTTCAGGTAGTGGTTGA 774 0.4664 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01474 257 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676
Pumo10g01474 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Pumo10g01474 257 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 249 - -
Pumo10g01474 257 MobiDBLite consensus disorder prediction 227 257 - -
Pumo10g01474 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pumo10g01474 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Pumo10g01474 257 CDD RRM2_SF2_plant_like 116 191 - -
Pumo10g01474 257 FunFam serine/arginine-rich splicing factor SR34A-like 116 193 - -
Pumo10g01474 257 FunFam serine/arginine-rich splicing factor SR34A-like 2 115 - -
Pumo10g01474 257 MobiDBLite consensus disorder prediction 81 106 - -
Pumo10g01474 257 Gene3D - 2 116 IPR012677 -
Pumo10g01474 257 MobiDBLite consensus disorder prediction 212 226 - -
Pumo10g01474 257 Gene3D - 117 193 IPR012677 -
Pumo10g01474 257 MobiDBLite consensus disorder prediction 193 257 - -
Pumo10g01474 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pumo10g01474 257 SMART rrm1_1 117 186 IPR000504 GO:0003723
Pumo10g01474 257 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01474 Pumo-Chr10 19637364 19641062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01474 6 200 Eukaryotic Initiation Factors Gene Family AT4G34110 21.675 9.53e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01474 K12890 - gmx:100800653 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01474 10 19637364 19641062 Pumo10g01474 10 19637364 19641062 ECH