Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo10g01473 | ATGGCTGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCCAGTCAAAACTTGGACAACAGTGTAGTGTCATCTGACTCAGGCGAGGTTGAGAAATCGAAACCCAGAAGTGGGTCCATCAACGGCGATCAGAAGCTGAACAACGGTGTTTTCAGCCACCAAGATAGAGTTCCTGGCACTATGTCAGTGCCCAATAGCAATTATAACTACAAAGCCCAAATTGGTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATGAATGGGATCAGGAGTGGGGAGGATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCTTGGCTACCTACCTGGTGCTGGTGCCGGTGCCGGGTTTGGTTACCCTAATAATTTTATACTGCTCAATGGTTATGGTAATGCTAACGGTCAAACTAACAGAAGGAGAAAGAATGGCTATAATCATGGGAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGTTGGCGGCACTCTTTCTTAACTGTGGCCAGGTCGTTGATTGCCGTGTGTGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTCGTTGAGTTTACAGACGAAGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCTCACTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTTTGGGCTCACTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGTTCGCGTGCTCCACGTACTTCTATGCACTGA | 1137 | 0.4538 | MAVAENVGAKIGSSSQNLDNSVVSSDSGEVEKSKPRSGSINGDQKLNNGVFSHQDRVPGTMSVPNSNYNYKAQIGQMHANGVNNDGYGMNGIRSGEDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTLGYLPGAGAGAGFGYPNNFILLNGYGNANGQTNRRRKNGYNHGKRRVNHKIDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFSLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRTSMH | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo10g01473 | 378 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 290 | 366 | IPR000504 | GO:0003723 | |
| Pumo10g01473 | 378 | Pfam | Ataxin-2 C-terminal region | 113 | 127 | IPR009818 | - | |
| Pumo10g01473 | 378 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 284 | 362 | - | - | |
| Pumo10g01473 | 378 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 193 | 268 | IPR000504 | GO:0003723 | |
| Pumo10g01473 | 378 | MobiDBLite | consensus disorder prediction | 9 | 28 | - | - | |
| Pumo10g01473 | 378 | SUPERFAMILY | RNA-binding domain, RBD | 165 | 269 | IPR035979 | GO:0003676 | |
| Pumo10g01473 | 378 | SMART | rrm1_1 | 194 | 264 | IPR000504 | GO:0003723 | |
| Pumo10g01473 | 378 | SMART | rrm1_1 | 291 | 362 | IPR000504 | GO:0003723 | |
| Pumo10g01473 | 378 | Gene3D | - | 277 | 374 | IPR012677 | - | |
| Pumo10g01473 | 378 | Gene3D | - | 154 | 270 | IPR012677 | - | |
| Pumo10g01473 | 378 | CDD | RRM1_CID8_like | 191 | 270 | IPR034823 | - | |
| Pumo10g01473 | 378 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Pumo10g01473 | 378 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 111 | 371 | - | - | |
| Pumo10g01473 | 378 | MobiDBLite | consensus disorder prediction | 39 | 58 | - | - | |
| Pumo10g01473 | 378 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 156 | 270 | - | - | |
| Pumo10g01473 | 378 | CDD | RRM2_CID8_like | 286 | 367 | IPR034825 | - | |
| Pumo10g01473 | 378 | SUPERFAMILY | RNA-binding domain, RBD | 281 | 372 | IPR035979 | GO:0003676 | |
| Pumo10g01473 | 378 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 195 | 258 | IPR000504 | GO:0003723 | |
| Pumo10g01473 | 378 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 359 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo10g01473 | Pumo-Chr10 | 19608036 | 19613374 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo10g01473 | 192 | 361 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 25.862 | 9.76e-11 | 60.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo10g01473 | - | - | gmx:106794116 | 706.057 |