Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01472 ATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACTTTGCCAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGACTGGCTTGGGAGACCAAGAGAGACACTCTGAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCGGTTGTCATCACTGACAGAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAATTCAGTAGCCCTTCATGGAATACAGCACCAATCCCATTTCAAGGCACCTCCAGTTATTATAATCAGCACATACCCCACTATCCATTTCCGTATCCAGCTTACAGGTATCCTGGTTATCCTCAACCACAAGACTTATATGAAATGAACTACAATAATGCATATGGTGGACAACAGCTTCCACTCCGCTGGTTTCCAGCATATTGTCAACCCTTTTATGGACTTAGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAATCCCTGACATGTCACCTCAGGAGTTCACAGTTGTTGGCTTCTCAGAACCTATTTCAGCTTCACCTTCAATTTCCAGCACTGGATTAGACACAGGAACAGTGCCTGCAACAAGAGTGCTAGAATCTCCCCAAGAACATAAATCTTCAACTTAA 762 0.4252 MSQPRQNKMMSPNFAKQVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITGRQKFSSPSWNTAPIPFQGTSSYYNQHIPHYPFPYPAYRYPGYPQPQDLYEMNYNNAYGGQQLPLRWFPAYCQPFYGLSRQFIPTAYVKKAQIPDMSPQEFTVVGFSEPISASPSISSTGLDTGTVPATRVLESPQEHKSST 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01472 253 PANTHER BOULE-RELATED 8 208 - -
Pumo10g01472 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 82 IPR000504 GO:0003723
Pumo10g01472 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Pumo10g01472 253 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Pumo10g01472 253 Gene3D - 1 111 IPR012677 -
Pumo10g01472 253 MobiDBLite consensus disorder prediction 224 253 - -
Pumo10g01472 253 SMART rrm1_1 25 97 IPR000504 GO:0003723
Pumo10g01472 253 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01472 Pumo-Chr10 19599924 19602377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01472 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 1.89e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01472 - - gmx:100788634 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01472 10 19599924 19602377 Pumo10g01472 10 19599924 19602377 ECH