Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo10g01472 | ATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACTTTGCCAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGACTGGCTTGGGAGACCAAGAGAGACACTCTGAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCGGTTGTCATCACTGACAGAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGGAAGGCAAAAATTCAGTAGCCCTTCATGGAATACAGCACCAATCCCATTTCAAGGCACCTCCAGTTATTATAATCAGCACATACCCCACTATCCATTTCCGTATCCAGCTTACAGGTATCCTGGTTATCCTCAACCACAAGACTTATATGAAATGAACTACAATAATGCATATGGTGGACAACAGCTTCCACTCCGCTGGTTTCCAGCATATTGTCAACCCTTTTATGGACTTAGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAATCCCTGACATGTCACCTCAGGAGTTCACAGTTGTTGGCTTCTCAGAACCTATTTCAGCTTCACCTTCAATTTCCAGCACTGGATTAGACACAGGAACAGTGCCTGCAACAAGAGTGCTAGAATCTCCCCAAGAACATAAATCTTCAACTTAA | 762 | 0.4252 | MSQPRQNKMMSPNFAKQVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITGRQKFSSPSWNTAPIPFQGTSSYYNQHIPHYPFPYPAYRYPGYPQPQDLYEMNYNNAYGGQQLPLRWFPAYCQPFYGLSRQFIPTAYVKKAQIPDMSPQEFTVVGFSEPISASPSISSTGLDTGTVPATRVLESPQEHKSST | 253 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo10g01472 | 253 | PANTHER | BOULE-RELATED | 8 | 208 | - | - | |
Pumo10g01472 | 253 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 82 | IPR000504 | GO:0003723 | |
Pumo10g01472 | 253 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 101 | IPR000504 | GO:0003723 | |
Pumo10g01472 | 253 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 99 | IPR035979 | GO:0003676 | |
Pumo10g01472 | 253 | Gene3D | - | 1 | 111 | IPR012677 | - | |
Pumo10g01472 | 253 | MobiDBLite | consensus disorder prediction | 224 | 253 | - | - | |
Pumo10g01472 | 253 | SMART | rrm1_1 | 25 | 97 | IPR000504 | GO:0003723 | |
Pumo10g01472 | 253 | CDD | RRM_RBM24_RBM38_like | 24 | 99 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo10g01472 | Pumo-Chr10 | 19599924 | 19602377 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo10g01472 | 20 | 100 | C2H2 Transcription Factor Family | AT2G19380 | 41.975 | 1.89e-14 | 70.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo10g01472 | - | - | gmx:100788634 | 490.345 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo10g01472 | 10 | 19599924 | 19602377 | Pumo10g01472 | 10 | 19599924 | 19602377 | ECH |