Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01467 ATGATGATCTACGTTCGACTTCTTTTGCTCCTTTTTTTCCTACTTCATCATTTTCATGACATACTATGCAACAATGGCACAGACAGAGATGCTCTTCTTTCTTTCAAATCCCAAGTGAGTGACCCACAAAATGTTCTGTCTAGGTGGTCTTCAGATTCCAACCACTGCACCTGGTATGGTGTTACATGCTCCAAAGTTGGAAAGAGGGTCCAATCTCTCACACTTTCAGGACTTGGCCTCTCTGGCAAACTACCCCCTCAGCTTTCCAACCTCACTTACCTTAACTCACTTGACCTTTCCAACAATAATTTTCATGGCCAAATACCACTAGAATTTGGCCATCTCACACTTCTCAATGTGATTAAATTACCTTCAAACAATCTCAGTGGTACACTTCCACAACAGCTGGGTCATCTCCATCGTCTACAAATTTTAGACTTTTCAGTCAATAATCTCACAGGTAAAATTCCTCCATCATTTGGCAATCTCTCTTCTCTTAAAAATCTTTCCTTGGCAAGGAACGGTTTCGGCGGTGAGATTCCAAGTGAACTTGGCAATCTCCACAATCTTTCCTCTCTTCAACTCTCTGAGAACAATTTCTCTGGCCAGTTTCCTACTTCTATCTTCAACATCTCTTCCTTAGTCTTCTTATCCGTGACAAGGAACAATTTATCAGGCAAGTTACCACAAAATTTTGGACATGCTCTTCCAAATTTAAAAAATCTATTTCTGGCAAGCAACAGATTTGAAGGGCTAATTCCTAATTCCATATCCAATGCCTCACATCTTCAATACATTGATCTTGCTCACAATGAATTTCACGGCCCCATGCCTCTATTCTACAACTTGAAAAACCTTACCCAACTGATTCTTGGTAATAATTTTCTCTCATCCACGACCTCGTTGAATTTTCAGTTCTTTGATTCCCTTATAAACTCCACCCAGTTGCAAATTCTCATGATCAATGATAACCATTTGGCTGGGGAGCTTCCAAGCTCTGTTGCTAATTTGTCTGGCAATCTCCAACAATTCTGTGTTGCTAATAATTTGCTAACTGGTACCATTCCTCAAGGAATGGAGAAATTTCAAAATCTCATATCCTTGTCTTTTGAAAACAATTCTTTCACTGGAGAGCTACCATCAGAAATAGGAGCACTACATAATCTACAGCGAATTGCGATATACAGCAACAGATTGTCTGGGGAAATTCCAGACATTTTTGGCAATTTCACAAATCTGTATATCCTTGCAATGGGAAATAACCAGTTCTCGGGTAGAATTCACCCAAGTATTGGACAATGCAAGAGATTAATTTTTCTTGACTTGGGAATGAATAGGCTTGGTGGGACCATACCAAAGGAGATTTTTCAGCTTTCTGGTTTAACAACATTGTATTTAGCAGAAAACTCTCTGCATGGTTCGCTCCCTCATGAGATCAACATCATGACACACCTTGAGACCATGGTTCTTTCTGGCAACCAGTTGTCAGGGAACATTCCTAATGAAATAGAGGGCTGTTCTAGCCTGAAGTGGCTTGTGATGGCAAGAAACAAATTCAATGGCTCAATCCCAACTAATGTTGGGAATTTAGCATCCCTTGAGACTTTGGATTTATCATCAAACAATCTCACCGGCCCTATTCCTCAAAGTTTAGAAAAGCTCCAGTATATACAGACATTAAATCTGTCTTTCAACCATTTGGAAGGGGAGGTTCCAATCAAAGGTGTTTTTATGAACCTTACCAAGTTTGACCTTCAAGGTAACAGCCAACTGTGTAGCCTTAACAATGAAATTGTGCAGAATTTGGGAGTTCTCCTGTGTGTTGTTGGCAAAAAGAAAAGAAAGGTCTTGCTCCCTGTCATACTTGCAGTTGTTGGTGCTACTGCTTTGCTCATTGCAATGCTCTTTGTATTTTGGACAATCAAGAAGAAAAGAAAGGAGGGGAAAACCAGTGTGTCATTTGCCCCTCTCAGAGGGTTGCCTCAAAATATATCTTATGGTGATATTCGGATTGCGACAAACAATTTTGCAGCTGAAAATTTGATTGGAAAAGGAGGCTTTGGTTCTGTGTACAAGGCCGTGTTTAGCTTCAGCACTGGTGAAACCACCACCCTTGCTGTCAAAGTGCTGGACCTGCAACAAAGCAAAGCTTCTCAGAGTTTCAATGCTGAATGTGAAGCTTTGAAAAATGTTAGGCATCGGAACCTAGTGAAGGTTATCACTTCTTGCTCTAGCCTTGATTATAAGGGAGAGGAATTTAAGGCCCTTGTTATGCAATTCATGCCCAATGGTAATTTGGACGCAAGTCTATACCCGGAAGATGTTGAGTCAGGATCCTCTCTAGCCTTGTTGCAAAGATTGAACATTGCCATTGATGTCGCTTCTGCTATGGACTACTTGCATCATGACTGTGATCCACCAGTAGTGCATTGTGATCTGAAACCTGCTAATGCCCTTTTAGATGAAAATATGGTAGCACATGTTGCAGATTTTGGATTGGCAAGGTTTCTATCTCAAAGTACATCAGAGATGGAGAGTAGCACTCTAGGACTGCAAGGATCAATCGGCTATATTGCCCCTGAATATGGTCTAGGAGGCAAGGCTTCAACTCAGGGTGATGTGTACAGTTTTGGGATCCTACTGCTAGAGATGTTCACAGCCAAAAAACCAACTGATGAAATGTTCAAAGAAGGATTAAGCCTAAGCAAATTTGTCTCAGCCATGGATGAGAATGAAGTACTGAAGGTTGCTGATCGAAGGCTTATTGATAATGATGAATATTCAACACAAAGCTCAAACACTGGTGATCATAGCAGTAGCTCTGATGGCAGCACAGATTGGAGGCGCAAAGCTGAGGAGTGCATAGCTGGTGTGATAAGAGTTGGGCTGAGTTGCACAGCTCATCAACCCAAAGATCGATGGAGCATGAGAGAGGCCTCAACAAAATTGCAAGCAATTAAGCACTCTATGTTGGCCTTGTGA 2982 0.4125 MMIYVRLLLLLFFLLHHFHDILCNNGTDRDALLSFKSQVSDPQNVLSRWSSDSNHCTWYGVTCSKVGKRVQSLTLSGLGLSGKLPPQLSNLTYLNSLDLSNNNFHGQIPLEFGHLTLLNVIKLPSNNLSGTLPQQLGHLHRLQILDFSVNNLTGKIPPSFGNLSSLKNLSLARNGFGGEIPSELGNLHNLSSLQLSENNFSGQFPTSIFNISSLVFLSVTRNNLSGKLPQNFGHALPNLKNLFLASNRFEGLIPNSISNASHLQYIDLAHNEFHGPMPLFYNLKNLTQLILGNNFLSSTTSLNFQFFDSLINSTQLQILMINDNHLAGELPSSVANLSGNLQQFCVANNLLTGTIPQGMEKFQNLISLSFENNSFTGELPSEIGALHNLQRIAIYSNRLSGEIPDIFGNFTNLYILAMGNNQFSGRIHPSIGQCKRLIFLDLGMNRLGGTIPKEIFQLSGLTTLYLAENSLHGSLPHEINIMTHLETMVLSGNQLSGNIPNEIEGCSSLKWLVMARNKFNGSIPTNVGNLASLETLDLSSNNLTGPIPQSLEKLQYIQTLNLSFNHLEGEVPIKGVFMNLTKFDLQGNSQLCSLNNEIVQNLGVLLCVVGKKKRKVLLPVILAVVGATALLIAMLFVFWTIKKKRKEGKTSVSFAPLRGLPQNISYGDIRIATNNFAAENLIGKGGFGSVYKAVFSFSTGETTTLAVKVLDLQQSKASQSFNAECEALKNVRHRNLVKVITSCSSLDYKGEEFKALVMQFMPNGNLDASLYPEDVESGSSLALLQRLNIAIDVASAMDYLHHDCDPPVVHCDLKPANALLDENMVAHVADFGLARFLSQSTSEMESSTLGLQGSIGYIAPEYGLGGKASTQGDVYSFGILLLEMFTAKKPTDEMFKEGLSLSKFVSAMDENEVLKVADRRLIDNDEYSTQSSNTGDHSSSSDGSTDWRRKAEECIAGVIRVGLSCTAHQPKDRWSMREASTKLQAIKHSMLAL 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01467 993 Gene3D Phosphorylase Kinase; domain 1 659 760 - -
Pumo10g01467 993 Gene3D Ribonuclease Inhibitor 174 278 IPR032675 -
Pumo10g01467 993 SUPERFAMILY L domain-like 340 595 - -
Pumo10g01467 993 Pfam Protein tyrosine and serine/threonine kinase 679 897 IPR001245 GO:0004672|GO:0006468
Pumo10g01467 993 MobiDBLite consensus disorder prediction 926 946 - -
Pumo10g01467 993 MobiDBLite consensus disorder prediction 926 941 - -
Pumo10g01467 993 PANTHER OS04G0122200 PROTEIN 178 989 - -
Pumo10g01467 993 SMART LRR_sd22_2 313 339 - -
Pumo10g01467 993 SMART LRR_sd22_2 139 165 - -
Pumo10g01467 993 SMART LRR_sd22_2 530 559 - -
Pumo10g01467 993 SMART LRR_sd22_2 236 262 - -
Pumo10g01467 993 SMART LRR_sd22_2 283 304 - -
Pumo10g01467 993 SMART LRR_sd22_2 187 213 - -
Pumo10g01467 993 Gene3D Ribonuclease Inhibitor 25 173 IPR032675 -
Pumo10g01467 993 SUPERFAMILY L domain-like 27 380 - -
Pumo10g01467 993 ProSitePatterns Protein kinases ATP-binding region signature. 682 708 IPR017441 GO:0005524
Pumo10g01467 993 PRINTS Leucine-rich repeat signature 94 107 - -
Pumo10g01467 993 PRINTS Leucine-rich repeat signature 530 543 - -
Pumo10g01467 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 761 993 - -
Pumo10g01467 993 FunFam Leucine-rich repeat receptor-like kinase 28 142 - -
Pumo10g01467 993 SUPERFAMILY Protein kinase-like (PK-like) 653 983 IPR011009 -
Pumo10g01467 993 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Pumo10g01467 993 ProSiteProfiles Leucine-rich repeat profile. 532 555 IPR001611 GO:0005515
Pumo10g01467 993 SMART LRR_typ_2 91 114 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 458 480 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 163 187 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 410 434 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 386 409 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 530 554 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 236 259 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 139 162 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 283 309 IPR003591 -
Pumo10g01467 993 SMART LRR_typ_2 482 506 IPR003591 -
Pumo10g01467 993 ProSiteProfiles Protein kinase domain profile. 676 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01467 993 FunFam Leucine-rich repeat protein kinase family protein 159 301 - -
Pumo10g01467 993 Gene3D Ribonuclease Inhibitor 279 600 IPR032675 -
Pumo10g01467 993 Gene3D Transferase(Phosphotransferase) domain 1 761 991 - -
Pumo10g01467 993 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Pumo10g01467 993 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Pumo10g01467 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 648 760 - -
Pumo10g01467 993 SMART serkin_6 676 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01467 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 302 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01467 Pumo-Chr10 19554410 19557604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01467 27 988 Receptor kinase-like Gene Family AT3G47570 41.642 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo10g01467 PK_Tyr_Ser-Thr 5.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01467 - - gmx:100776054 1687.16