Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01459 ATGGAGGGAGATGAGAATATTCAAGCATCATCAAAGGGAAAAAATGTTGAAAGCTTCACCTGCTTGGAGGCACCAAGGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAATTGGCAAGAGATCTTGGCCTGCAGCCTCGCCAAGTTGCCATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACGCATAGAGCAAGAGTACAGGAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTCGAGTCCCTAAAGAAAGAGAAGGACTCTTTGCAATCAGAGTTGCAGAAGCTAAGTGATTTGGTGGTGACATCTCAAGATGGTGGAAGGGAAGACAAGGCTGGCAAAGAAAACAGCATAGAAGATGGTGGCTCAGGCAGTGGATACAGCAGTTGGAAGCCTGAAGCAAAACCAAGGTTTTCAAATGAGGGTTTGGAGGAGAGAATAGGTGTGTACTCAGATGATCAAAATGAGAATAGCATCATAAGGGGTGAGAAAATCTGA 588 0.4252 MEGDENIQASSKGKNVESFTCLEAPRKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKDSLQSELQKLSDLVVTSQDGGREDKAGKENSIEDGGSGSGYSSWKPEAKPRFSNEGLEERIGVYSDDQNENSIIRGEKI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01459 195 CDD homeodomain 35 90 IPR001356 GO:0003677
Pumo10g01459 195 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Pumo10g01459 195 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Pumo10g01459 195 SUPERFAMILY Homeodomain-like 24 89 IPR009057 -
Pumo10g01459 195 Coils Coil 81 129 - -
Pumo10g01459 195 FunFam Homeobox-leucine zipper protein ATHB-7 16 89 - -
Pumo10g01459 195 MobiDBLite consensus disorder prediction 167 195 - -
Pumo10g01459 195 Pfam Homeobox associated leucine zipper 89 129 IPR003106 GO:0006355|GO:0043565
Pumo10g01459 195 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Pumo10g01459 195 MobiDBLite consensus disorder prediction 129 195 - -
Pumo10g01459 195 Gene3D - 37 84 - -
Pumo10g01459 195 SMART HOX_1 32 93 IPR001356 GO:0003677
Pumo10g01459 195 Gene3D - 85 132 - -
Pumo10g01459 195 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 144 IPR045224 GO:0003700
Pumo10g01459 195 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Pumo10g01459 195 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01459 Pumo-Chr10 19430324 19431007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01459 16 122 Homeobox Transcription Factor Family AT2G46680 67.290 4.02e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo10g01459 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01459 K09338 - gmx:100793260 353.984