Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01450 ATGGGAGGTTCATCGGAGACGAAGTTCCTGCAAGACCTGTTGTTGTACGCGGCGAGCGCGGCGCTGAGTTGCTTGGTATTATTCGCGGGGCTGAGACACCTGGACCCTAATCGTGAAGCATCGAAGAAGGCTCTGGAGCATAAGAAAGAGATTGCAAAGCGTCTCGGTCGCCCCCTCATTCAGACTAACCCCTATGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTCAACTCTATTGGGGGACTGGAATCAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGACTTGTTTTCACATGGTAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTACGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCGGGAGCAGTTTTTATTAACGTGAGAATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTGCTGCTGTATTTACCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTCATGGCTCTGTGGGATGGATTTACAACAGATCAGAATGCTCGAGTCATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGACTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTGGTCATATAGCTGGCTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTGCTTGATGAAGAGAAGAAAGGAAAACGATCTCCTGCTCCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCCCTTGCTACTTCACAGAAGACAAAGGTTGCTGCAAGTGAATACAGTGGATTCAGCCTTCAGTCACCTTCAAGATGGACAGTGCCTGGTGAGTCAGGTGATTCTCAGATTCAAGCTGCACTCAATGAATTCTCTAAGCTTATGGTTTCTCACATGATTAACCTCCAATCAGATTCCCAGGATCCTTAA 1179 0.4504 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLESIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFTLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERTEILKVILKGERVEDNIDFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPAPRPLSQLDLEKALATSQKTKVAASEYSGFSLQSPSRWTVPGESGDSQIQAALNEFSKLMVSHMINLQSDSQDP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01450 392 Gene3D - 253 333 - -
Pumo10g01450 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Pumo10g01450 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Pumo10g01450 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Pumo10g01450 392 Pfam AAA+ lid domain 274 310 IPR041569 -
Pumo10g01450 392 CDD RecA-like_ATAD1 85 250 - -
Pumo10g01450 392 SMART AAA_5 118 254 IPR003593 GO:0016887
Pumo10g01450 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 346 - -
Pumo10g01450 392 Gene3D - 80 338 IPR027417 -
Pumo10g01450 392 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01450 Pumo-Chr10 19316359 19320638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01450 39 318 Calmodulin-binding Proteins AT3G56690 32.394 4.68e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01450 K22530 - gmx:100796908 738.799