Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01440 ATGGCGAACGAATTATTAGCTCGTGCCTCACATGCCCCAACATCTGAGTTACTTTCCCGGACCATCTTTACTGTATTTGACACTGTCAAAGCAGCCAATGAGGTTGTGGTTCACAAGGAAAATTTTAAGAGATTCTCTATGCACTTGGAGAATGTCTCATTTATATTGAAGTCTTTATCAAAGGAAGACATACACAATCCCGAGAGCTTGGAAAATGCTATGAATGGTCTCAACCGAGAGGTTGGTGTTGCTAAGCAGCTTTTTGTTGAGTGCAACAGTAGAAGTAAGGTTTATCTTTTAATCAATTCTAGAAAGATCGTTGCACGCTTGAATTGTTGTACCAAGGATATCGGTCGCGCAATAAGCCTCATCCCTTTGGCCTCTTTAGACATTAACTCTGGCTTAAATCAACAGATAAGTGAGTTATGTCAGAAAATGCTGGATGCTGAGTATCAAACAGCTGCAGCAGATGAGGAAATTTTGGAGAAAATTGAGACAGCAATACAAGAGGGAGATGTTGATCGGTCATATGCGAATCAGTTGCTAACCTGCATTGCAGATGCCATTGGTGTCCCCTTGGAGCATGGTGCATTGAAGAGAGAGATTGAAGAGCTGAAAAATGAAATGGCAAATGCCAAGTCAAGGATAGATGTGGCAGAAGCTCTACATATGGAGCAGATTATTGCAGTGCTTGGAAAGGCTGATTTTATAACCTCAGCACAAGAGAAGGAAACTAGGTATTTTGAAAAGAGAAATTCCTTGGGAGAGAGACCATTGATGGCTCTTCAGTCTTTTTACTGCCCAATCTCTCTTGATATTATGGTGGACCCTGTGGAGACTTCTTCTGGTAAGACATTTGAGAGAAGGGAAATAGAGAAATGGTTTGCTGAAGGGAACACTGACTGTCCCTTGACCAGGTTGCCTCTAGATACTAAAATCCTAAGGCCAAATAAAACTCTTAAACAGTCTATTCAAGAGTGGAAGGACAGGAACACAATGATTACCATTTCTGCCATCAAATCCGAACTTGAAACAAATGATGAAGAGGAAGTGATTATATCCTTAGAAAAATTACAGAACCTATGCTTAGAAAGAGAGGTGCACCGAGAATGGTTAAAAATGGAGAATTACATTACCGTTCTTATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTACTCATCCTGTCCATGCTTGCAATGGATAATGCAGATAATAAGGAAGATATTGCTAAAGTGGATAATGCACTTGGATCAATTGTTCGCTTGCTTTCACGTCAAGTTGAGGAACGCAAGTTGGCATTGGAGTTGTTGTTGGAGTTATCTAAATGTAAAATGGTGTGCAGTCTCATAGGAAACATTCAAGGGAGTATACTTCTCCTGGTATCAATGTTAAATAGTGATGATGTTGCAGCAGCCAAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTTCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTACTGATGAAACTTTCTACAGAGGGGGAAGGGACTTCATTTTTACTTTTTAGTAGTTGGCATTGA 1581 0.4004 MANELLARASHAPTSELLSRTIFTVFDTVKAANEVVVHKENFKRFSMHLENVSFILKSLSKEDIHNPESLENAMNGLNREVGVAKQLFVECNSRSKVYLLINSRKIVARLNCCTKDIGRAISLIPLASLDINSGLNQQISELCQKMLDAEYQTAAADEEILEKIETAIQEGDVDRSYANQLLTCIADAIGVPLEHGALKREIEELKNEMANAKSRIDVAEALHMEQIIAVLGKADFITSAQEKETRYFEKRNSLGERPLMALQSFYCPISLDIMVDPVETSSGKTFERREIEKWFAEGNTDCPLTRLPLDTKILRPNKTLKQSIQEWKDRNTMITISAIKSELETNDEEEVIISLEKLQNLCLEREVHREWLKMENYITVLIGLLSSKNREIRKRVLLILSMLAMDNADNKEDIAKVDNALGSIVRLLSRQVEERKLALELLLELSKCKMVCSLIGNIQGSILLLVSMLNSDDVAAAKNAHELLENLSFLDQNVIEMAKANYLKPLLMKLSTEGEGTSFLLFSSWH 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01440 526 Coils Coil 195 222 - -
Pumo10g01440 526 CDD RING-Ubox_PUB 265 314 IPR045210 -
Pumo10g01440 526 Gene3D - 16 128 IPR036537 GO:0007166
Pumo10g01440 526 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 511 - -
Pumo10g01440 526 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Pumo10g01440 526 Pfam MCAfunc domain 29 154 IPR045766 -
Pumo10g01440 526 SUPERFAMILY RING/U-box 256 333 - -
Pumo10g01440 526 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Pumo10g01440 526 SUPERFAMILY ARM repeat 335 513 IPR016024 -
Pumo10g01440 526 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Pumo10g01440 526 Gene3D - 339 518 IPR011989 -
Pumo10g01440 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 338 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01440 Pumo-Chr10 19226442 19228667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01440 263 525 U-box Gene Family AT1G20780 31.250 7.82e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01440 - - gmx:100818273 890.182