Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01439 ATGGTTACTGCTATGGGTATCATCTCTAAACTACCACAGGAGTCTCACATGACCCAGTGGCTTCTAGATTCTGGGGCACTTAAAACTATTCTGACTTGTCTTACCAACCAACATAGACATGCCTCACACAAAAAGCAAGTCATAGAGAATTCTGTTCAAGCTTTCTGTCGTTTTACTGTCTCAACAAACCCGGAGTGGCAGAAGAGAGTGGCTTTAGAAGGCATAATCCCAGTGCTGGTGCAATTGCTGCATTCTGGAACACCCTTTACAAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATATCGCTTGCGCGAGCCAATAAAGAAGCCTAGCATTTTCAAATGCTGCCTTGTAGCCAAAGAAACTGGTTGTCCAGCACACATAGGCACCTGCTCAGTTGAGTCTTCATTCTGCATCTTGCAAGCTAATGCCTTGGAGCCCCTTGTGTGCATGCTTGCAGAGCAAGATGTTGGAACGCGTGAAGCTTCATTAGATGCGCTGCTAACTTTGGTTGATAGTGAAGCACCACAGAGTGGAAGTAAGGTACTTGCAAATGCAAATGCTATTGCACCAATGATACAACTATTGAGTGTTCCGGCTCCCAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATTTTTCAACTAGATGAAGTGAGAAACAAGTACAAAGCTGCGGCCACAATGCCCTTGGTAGATATAACTCAGGGGAAAGATACCCGTTTGAGAAGTCTTGCTGCCAAAGGCCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAG 810 0.4346 MVTAMGIISKLPQESHMTQWLLDSGALKTILTCLTNQHRHASHKKQVIENSVQAFCRFTVSTNPEWQKRVALEGIIPVLVQLLHSGTPFTKQNAAISIKQFSESSYRLREPIKKPSIFKCCLVAKETGCPAHIGTCSVESSFCILQANALEPLVCMLAEQDVGTREASLDALLTLVDSEAPQSGSKVLANANAIAPMIQLLSVPAPRLQEKILIALERIFQLDEVRNKYKAAATMPLVDITQGKDTRLRSLAAKGLAQLGVLDKQSSYF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01439 269 Gene3D - 127 266 IPR011989 -
Pumo10g01439 269 SUPERFAMILY ARM repeat 14 261 IPR016024 -
Pumo10g01439 269 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 269 - -
Pumo10g01439 269 SMART arm_5 14 60 IPR000225 GO:0005515
Pumo10g01439 269 SMART arm_5 63 103 IPR000225 GO:0005515
Pumo10g01439 269 SMART arm_5 137 177 IPR000225 GO:0005515
Pumo10g01439 269 SMART arm_5 181 221 IPR000225 GO:0005515
Pumo10g01439 269 Gene3D - 1 114 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01439 Pumo-Chr10 19223574 19225299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01439 17 269 U-box Gene Family AT1G76390 26.642 1.19e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01439 - - gmx:100818273 476.863